Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16910 886 / 0 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) AT1G20560 588 / 0 AAE1 acyl activating enzyme 1 (.1.2) AT2G17650 558 / 0 AMP-dependent synthetase and ligase family protein (.1) AT5G16370 523 / 0 AAE5 acyl activating enzyme 5 (.1) AT5G16340 521 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G75960 498 / 5e-172 AMP-dependent synthetase and ligase family protein (.1) AT1G21530 496 / 3e-171 AMP-dependent synthetase and ligase family protein (.1.2) AT1G66120 496 / 7e-171 AMP-dependent synthetase and ligase family protein (.1) AT1G21540 489 / 2e-168 AMP-dependent synthetase and ligase family protein (.1) AT1G65880 484 / 4e-166 BZO1 benzoyloxyglucosinolate 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037735 [exp] 1083 / 0 AT3G16910 909 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10016869 [exp] 901 / 0 AT3G16910 902 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10037734 [exp] 897 / 0 AT3G16910 897 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10016011 [exp] 586 / 0 AT1G20560 846 / 0.0 acyl activating enzyme 1 (.1.2) Lus10028375 [exp] 549 / 0 AT2G17650 793 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10007369 [exp] 530 / 0 AT1G65890 724 / 0.0 acyl activating enzyme 12 (.1) Lus10020787 [exp] 523 / 0 AT1G65890 727 / 0.0 acyl activating enzyme 12 (.1) Lus10010956 [exp] 521 / 3e-180 AT1G65890 696 / 0.0 acyl activating enzyme 12 (.1) Lus10039161 [exp] 514 / 6e-178 AT5G16370 781 / 0.0 acyl activating enzyme 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G108000 [exp] 918 / 0 AT3G16910 904 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Potri.002G010600 [exp] 597 / 0 AT1G20560 823 / 0.0 acyl activating enzyme 1 (.1.2) Potri.005G250700 [exp] 593 / 0 AT1G20560 790 / 0.0 acyl activating enzyme 1 (.1.2) Potri.005G099500 [exp] 560 / 0 AT2G17650 800 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.019G067800 [exp] 543 / 0 AT5G16370 799 / 0.0 acyl activating enzyme 5 (.1) Potri.015G148500 [exp] 535 / 0 AT5G16370 760 / 0.0 acyl activating enzyme 5 (.1) Potri.017G138350 [exp] 529 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.013G096200 [exp] 528 / 0 AT5G16340 779 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.019G068001 [exp] 527 / 0 AT5G16340 775 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G000300 [exp] 526 / 0 AT5G16340 756 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10016870 pacid=23179065 polypeptide=Lus10016870 locus=Lus10016870.g ID=Lus10016870.BGIv1.0 annot-version=v1.0 ATGGCGAGAGATATCGACGATCTTCCCAAACTACCAGCTAACTACACCGCTTTGACTCCTCTTTGGTTCCTGGAGCGAGCCGCCACCGTCCACCCGACCC GCCCCGCTCTCGTCCATGGATCGCAACAGTACACTTGGTCTGAGACTTACGCCCGCTGCCGCCGTTTGGCCTCCGCCCTTTCCCGCCACTCCATCTCCTC CGGCTCCACTGTCGCGATCATTGCACCGAACGTCCCAGCACTATATGAAGCACATTTCGGAGTTCCAATGTCAGGGGCAGTGTTGAACACGGTCAACATT CGTCTCAACGCACAGACCATAGCTTTCCTGCTGGGCCACTCTGAATCAGCAGTTGTGATGGTTGACCAGGAGTTCTTTAGATTAGCTGAGGATGCCTTAA AGATACTGAACGAGAGCAAGAAGGATTACAAACCAATTTTGATCGTGATTGGTGATCCGAGCTGTGAAACCAAGTCGTTGGAATATGCTTTGGGGAAAGG AGCTGTCGAGTATGAGAAGTTCTTGGCAGATGGTGACCCTGATTTTGCTTGGATGCCACCGGAGGATGAGTGGCAAAGCATTGCTTTGGGGTATACTTCT GGCACCACGGCTAGCCCCAAGGGAGTTGTGTTGAGCCATCGAGGAGCTTATCTCATGTCGTTGAGTGGTGCGATGATTTGGGGGATGAATGAAGGAGCTG TATACCTTTGGACTCTGCCCATGTTCCATTGTAATGGGTGGTGTTATACATGGTCACTTGCTGCACTTTCTGGAACCAATATATGCCTTAGACAGGTATC AGCAAAGGCAGTCTATTCAGCCATTGCCAAATACGGTGTGACTCACTTCTCTGCTGCACCAGTGGTACTAAACACAATTGTGAATGCACGAAAGGAAGAC ATCATCCATCCTCTACCTAGAGTTGTCCATGTCAGCACAGCCGGTGCTGCTCCACCGCCTTCTGTACTCTTTGCCATGGCAGAAAGAGGATTCCGTGTGA CTCATACATACGGTCTCTCAGAAACATATGGTCCTTCCACAGTATGTGCATGGAAACCCGAGTGGGACTCCGAACCCCCCATAAACCAAGCCCGCCTCAA CGCTCGCCAAGGCGTCCGATACATTGGCTTGGAAGGCCTCAATGTCGTCGACCCCAAAACTGCAAAGCCAGTTCCTGCTGATGGAAAGACAATGGGAGAA ATAGTAATGCGAGGGAACCTCGTGATGAAGGGATACTTAAAGAACCCAAAAGCCAACGAGGAAGCTTTTGCAAACGGGTGGTTCCACACGGGGGATCTTG CTGTAAAGCATCCGGATACCTACATAGAGATCAAGGACAGGTCCAAGGACGTAATTATCTCCGGCGGGGAGAACATAAGCAGCGTGGAGGTTGAGAATGT TCTCTACACTCACCCGGCGGTGTTGGAAGTATCGGTAGTGGCTCGAGATGACGAGCGGTGGGGAGAGTCTCCCTGCGCTTTCGTGACGCTGAAAGCTGAG GTGGATAACTCGGATGAGAAACGGTTGGCTGAGGAGATAATGAAGTTCTGCAGGTCGAAGATGCCAGCTTACTGGGTGCCGAAATCTGTGGTGTTTGGGG CTTTGCCGAAGACGGCCACTGGTAAGATTCAGAAGCATGTGCTGAGAGGTAAAGCCAAAGAGATGGGTCCTCTGAAGAAGAGCAGATTGTGA
AA sequence Show only first row Show all	>Lus10016870 pacid=23179065 polypeptide=Lus10016870 locus=Lus10016870.g ID=Lus10016870.BGIv1.0 annot-version=v1.0 MARDIDDLPKLPANYTALTPLWFLERAATVHPTRPALVHGSQQYTWSETYARCRRLASALSRHSISSGSTVAIIAPNVPALYEAHFGVPMSGAVLNTVNI RLNAQTIAFLLGHSESAVVMVDQEFFRLAEDALKILNESKKDYKPILIVIGDPSCETKSLEYALGKGAVEYEKFLADGDPDFAWMPPEDEWQSIALGYTS GTTASPKGVVLSHRGAYLMSLSGAMIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALSGTNICLRQVSAKAVYSAIAKYGVTHFSAAPVVLNTIVNARKED IIHPLPRVVHVSTAGAAPPPSVLFAMAERGFRVTHTYGLSETYGPSTVCAWKPEWDSEPPINQARLNARQGVRYIGLEGLNVVDPKTAKPVPADGKTMGE IVMRGNLVMKGYLKNPKANEEAFANGWFHTGDLAVKHPDTYIEIKDRSKDVIISGGENISSVEVENVLYTHPAVLEVSVVARDDERWGESPCAFVTLKAE VDNSDEKRLAEEIMKFCRSKMPAYWVPKSVVFGALPKTATGKIQKHVLRGKAKEMGPLKKSRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10016870 [exp]	0	1
AT5G57260		CYP71B10	"cytochrome P450, family 71, s...		Lus10030189 [exp]	1.7	0.9531
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10029136 [exp]	2.8	0.9429
AT3G23610		DSPTP1	dual specificity protein phosp...		Lus10036877 [exp]	3.7	0.9410
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Lus10019262 [exp]	4.2	0.9420
AT4G28400			Protein phosphatase 2C family ...		Lus10008556 [exp]	6.0	0.9441
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033743 [exp]	7.1	0.9507
AT5G41350			RING/U-box superfamily protein...		Lus10032270 [exp]	8.5	0.9390
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031660 [exp]	9.7	0.9425
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10019478 [exp]	11.3	0.9283
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Lus10016625 [exp]	13.4	0.9353

Compare expression of checked genes

Lus10016870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.