Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 708 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 693 / 0 ARK3 receptor kinase 3 (.1) AT4G27300 654 / 0 S-locus lectin protein kinase family protein (.1) AT1G65800 654 / 0 ARK2 receptor kinase 2 (.1) AT1G65790 649 / 0 ARK1 receptor kinase 1 (.1) AT1G11340 593 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 587 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G11410 585 / 0 S-locus lectin protein kinase family protein (.1) AT1G11300 585 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G61610 563 / 0 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016860 [exp] 1279 / 0 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10037732 [exp] 1273 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10037729 [exp] 1253 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016862 [exp] 1180 / 0 AT4G27290 702 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037731 [exp] 1002 / 0 AT4G27290 644 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016859 [exp] 982 / 0 AT4G27290 626 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 733 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 732 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 731 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G418100 [exp] 934 / 0 AT4G27290 778 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411300 [exp] 932 / 0 AT4G27290 759 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411000 [exp] 922 / 0 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411400 [exp] 915 / 0 AT4G27290 770 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411100 [exp] 913 / 0 AT4G27290 746 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G410800 [exp] 909 / 0 AT4G27290 758 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 809 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412300 [exp] 795 / 0 AT4G27290 886 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 790 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G409300 [exp] 773 / 0 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF11883 [flax] [poplar] DUF3403 Domain of unknown function (DUF3403) CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10016871 pacid=23179110 polypeptide=Lus10016871 locus=Lus10016871.g ID=Lus10016871.BGIv1.0 annot-version=v1.0 ATGGAGTGGTTGATGTTGCTTCTTCTTCTCTCAGTTGTTTATTCTCTCCTCTTATTACCCTCTTGTTCTGCACTTGAATCCATCACTCCAACCCAACCAT TCATTGACAACAACAACGATCCACAAACCTTAAAATCCAGAGATGGAACATTCGAGCTCGGTTTCTTCACTCCTCCAGGCGCACCTTCGAGGAATCGTTA CTTGGGAATCTGGTACAGAAACATAGCCGTTAGAAAAATCGTCTGGGTAGCCAATCGGGAAAATCCAGCCACAGACGACGGTAGCTCTTTGATCATCGAC GCTTCCAAGAACAACAGCCTGGCACTCGTCAGCAGTAGCAACAATAACACTGCTCTTTGGTCTACTTCGGAATACCGTACCTCGATATTGATCCCGGCGA ATCCAGTAGCTGAGATTCTGAACACGGGGAATCTGGTGCTAAGAGATCAGAACGATGAAAATCGCAATAACTACTTGTGGCAGAGCTTTGACTACCCATG TGATACCCTGTTACCAGGGATGAAGCTTGGATGGGATTCTGTCTCAGGGCTCAACCGTCAACTAACGGCGTGGAAGAGTCCCGAGGATCCGTCCGCCGGA GACTTCACTTGGGGTTACCAAGTTCATCAGGATAACCCGGAGGCGTTTATGTGGAAGGGTTCTGATAAAGTTTACAGAAGTGGACCGTGGAATGGATTGG GGTTTAGTACAGCACCTGAATTGAGGGAGAATCCTGTTTTTTCGTACAAATTCGTATGGGACGACAAAAATGTTTACTACGAATTCGAGCTGAAGAACGA GTCGTTGATCTCGATCATAGTCATGAACGAGACTTCGTATACGAGGCAACGAGTGGCTTGGAATGAGGTTACTCAGACTTGGGGGATGTTTACTTCGGTT CCCAGGGATCGATGCGACACCTACGCGATATGTGGTGTCTATGCGACCTGCGCAATTTTCGAGTCTCCAATTTGTCAGTGCTTGAAAGGGTTCAAGCCTA AGTCGCAGGAGATGTGGGATATGTTGGACTGGTCGCAAGGGTGTGTGAGAGATAAGCCGTTAGAGTGCTCGGAAGGGAGCACTGGAGATGGGTTTATCAA GTATAGTGGGTTGAAGTTGCCCGATGCTACGAATTCATGGGTGAACAAGAGTATGAGTCTGGAGGAATGCAGGGTCAAGTGTTTGATGAATTGTTCGTGC ATGGCGTATACTAGTACCGATATTCGAGGAGCGGGAAGTGGGTGTACTGTTTGGTACGGTGATCTGAACGATATGACACAGTTTACAGGCGGGGGACAGG ATGTGTACATTAGAATGCCTGCTTCCGAAATCGAGAGCAGCAGTAAGGTGAAAACAAGGGTAGGTGCCATTGTTGGAGGTGTGATTGGCACTCTGCTTGG GTTGATTGCCATTGGCTATTCCGTCCGTAAGATGAAATCGAAGTACAGACCAAGAGGCGGCATCAAGATGAGTACTGCAACACTCGGCAGAAAAGATGAA GTAGAGCTACCATTGTTTGAGCTAGCTACAATAGTTGATGCCACTCACAACTTTGCATCTGCCAACAAGTTGGGTGAAGGTGGATATGGACCAGTCTACG TGGGTGTTCTGAGAGATGGACAAGAAATTGCAGTGAAGAGGCTATCGAGCAGTTCCGGGCAAGGGATGAAGGAGTTCAAGAATGAAGTACTACTGATTTC AAAACTTCAGCATAGGAATCTTGTCAAGCTTCTAGGATGTTGTATACAGGGAGACGAGAAGATGTTGGTTTATGAATACATGCCTAACAAAAGCCTTGAC TCCTTCATTTTTGATGACAAGAAGAGTGGAGTGCTAGATTGGGGGAAGCGTTTCAACATTATTTGCGGTATAGCTAGAGGGCTATTGTATCTTCATCAGG ATTCGAGATTGAGGATTATACATAGAGATTTGAAAGCAAGTAATGTACTACTTGATAATGAGCTGAATCCGAAAATTTCAGATTTCGGCATGGCTAGAAG TTTCGGAGGAGATAATAGTGAAGGAAACACAAACAGAGTGGTCGGAACATATGGATACATGGCACCGGAATATGCAGCTGATGGATTATTTTCAGTCAAA TCAGATGTTTTCAGTTTTGGAATTCTCGTATTAGAGATTATAAGTCGGAGGAAGAGTCGTGGGTTCTTTCATACAGATGAGAGTTTGAACCTTATTGGAT ATGCTTGGAAATTGTGGAAGGAAGGGAAAGCAATGGAAATAATGGATTCAACATTAGAAGAAGCATCTTATGAAATTGTGTCACAAGTGATGAGATGTAT CCATATAGGCTTGTTATGTGTTCAGGGTTCTGCCGAGGACAGACCCACTATAGGAAACGTGGTTGTAATGTTGGTAGGAGGAGAAGAGACGGATGCACTA TTACCTTCACCAAAAGAACCTGGATTTTACAAAGGTAAGGATCCATTTCATACAACAGATTCATCGTCAAATATCCTTCCGTCATCTTCTACCAATGAAC TGAGCTTTACGGTGCTAGAACCTCGTTGA
AA sequence Show only first row Show all	>Lus10016871 pacid=23179110 polypeptide=Lus10016871 locus=Lus10016871.g ID=Lus10016871.BGIv1.0 annot-version=v1.0 MEWLMLLLLLSVVYSLLLLPSCSALESITPTQPFIDNNNDPQTLKSRDGTFELGFFTPPGAPSRNRYLGIWYRNIAVRKIVWVANRENPATDDGSSLIID ASKNNSLALVSSSNNNTALWSTSEYRTSILIPANPVAEILNTGNLVLRDQNDENRNNYLWQSFDYPCDTLLPGMKLGWDSVSGLNRQLTAWKSPEDPSAG DFTWGYQVHQDNPEAFMWKGSDKVYRSGPWNGLGFSTAPELRENPVFSYKFVWDDKNVYYEFELKNESLISIIVMNETSYTRQRVAWNEVTQTWGMFTSV PRDRCDTYAICGVYATCAIFESPICQCLKGFKPKSQEMWDMLDWSQGCVRDKPLECSEGSTGDGFIKYSGLKLPDATNSWVNKSMSLEECRVKCLMNCSC MAYTSTDIRGAGSGCTVWYGDLNDMTQFTGGGQDVYIRMPASEIESSSKVKTRVGAIVGGVIGTLLGLIAIGYSVRKMKSKYRPRGGIKMSTATLGRKDE VELPLFELATIVDATHNFASANKLGEGGYGPVYVGVLRDGQEIAVKRLSSSSGQGMKEFKNEVLLISKLQHRNLVKLLGCCIQGDEKMLVYEYMPNKSLD SFIFDDKKSGVLDWGKRFNIICGIARGLLYLHQDSRLRIIHRDLKASNVLLDNELNPKISDFGMARSFGGDNSEGNTNRVVGTYGYMAPEYAADGLFSVK SDVFSFGILVLEIISRRKSRGFFHTDESLNLIGYAWKLWKEGKAMEIMDSTLEEASYEIVSQVMRCIHIGLLCVQGSAEDRPTIGNVVVMLVGGEETDAL LPSPKEPGFYKGKDPFHTTDSSSNILPSSSTNELSFTVLEPR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27290			S-locus lectin protein kinase ...		Lus10016871 [exp]	0	1
AT2G19130			S-locus lectin protein kinase ...		Lus10042266 [exp]	1.0	0.9688
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10016461 [exp]	2.0	0.9626
AT5G50760			SAUR-like auxin-responsive pro...		Lus10003140 [exp]	2.2	0.9586
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Lus10014429 [exp]	2.6	0.9573
AT4G35160			O-methyltransferase family pro...		Lus10013945 [exp]	4.6	0.9456
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10007631 [exp]	4.7	0.9523
AT5G58630			unknown protein		Lus10040661 [exp]	5.1	0.9436
					Lus10033269 [exp]	5.3	0.9596
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10039599 [exp]	5.5	0.9528
AT5G61820			unknown protein		Lus10017316 [exp]	5.7	0.9599

Compare expression of checked genes

Lus10016871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.