Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16920 354 / 5e-124 ATCTL2 chitinase-like protein 2 (.1) AT1G05850 333 / 4e-116 CTL1, HOT2, ERH2, ELP1, POM1, ATCTL1 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) AT1G02360 166 / 4e-51 Chitinase family protein (.1) AT4G01700 164 / 3e-50 Chitinase family protein (.1) AT3G12500 159 / 1e-47 PR-3, PR3, CHI-B, B-CHI, ATHCHIB PATHOGENESIS-RELATED 3, basic chitinase (.1) AT2G43590 92 / 2e-22 Chitinase family protein (.1) AT2G43570 89 / 4e-21 CHI "chitinase, putative", chitinase, putative (.1) AT2G43610 87 / 1e-20 Chitinase family protein (.1) AT2G43580 87 / 1e-20 Chitinase family protein (.1) AT3G54420 86 / 3e-20 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037737 [exp] 436 / 2e-156 AT3G16920 499 / 2e-179 chitinase-like protein 2 (.1) Lus10041278 [exp] 343 / 7e-120 AT1G05850 504 / 0.0 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) Lus10037430 [exp] 343 / 9e-120 AT1G05850 505 / 0.0 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) Lus10037428 [exp] 331 / 5e-115 AT1G05850 489 / 1e-175 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) Lus10041282 [exp] 174 / 4e-56 AT1G05850 192 / 2e-62 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) Lus10009968 [exp] 163 / 7e-50 AT1G02360 409 / 1e-145 Chitinase family protein (.1) Lus10038026 [exp] 161 / 6e-49 AT1G02360 412 / 9e-147 Chitinase family protein (.1) Lus10028377 [exp] 155 / 2e-46 AT3G12500 393 / 1e-137 PATHOGENESIS-RELATED 3, basic chitinase (.1) Lus10041830 [exp] 152 / 4e-45 AT3G12500 402 / 4e-141 PATHOGENESIS-RELATED 3, basic chitinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G141600 [exp] 374 / 5e-132 AT3G16920 458 / 4e-163 chitinase-like protein 2 (.1) Potri.014G146600 [exp] 311 / 1e-107 AT3G16920 456 / 2e-162 chitinase-like protein 2 (.1) Potri.014G111800 [exp] 167 / 1e-51 AT4G01700 422 / 1e-150 Chitinase family protein (.1) Potri.002G186500 [exp] 163 / 5e-50 AT1G02360 413 / 2e-147 Chitinase family protein (.1) Potri.004G182000 [exp] 159 / 1e-47 AT3G12500 460 / 5e-164 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142150 [exp] 152 / 3e-46 AT3G12500 365 / 8e-128 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G141700 [exp] 154 / 4e-46 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G141800 [exp] 150 / 3e-44 AT3G12500 351 / 9e-121 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142300 [exp] 147 / 4e-43 AT3G12500 340 / 1e-116 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.004G182100 [exp] 143 / 3e-41 AT3G12500 306 / 7e-103 PATHOGENESIS-RELATED 3, basic chitinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [flax] [poplar] Lysozyme PF00182 [flax] [poplar] Glyco_hydro_19 Chitinase class I
Representative CDS sequence Show only first row Show all	>Lus10016872 pacid=23179038 polypeptide=Lus10016872 locus=Lus10016872.g ID=Lus10016872.BGIv1.0 annot-version=v1.0 ATGGGCCAGAAGGAGCTCGCCGCTTTCCTCGGCCACGTCGGCAGCAAAACTTCATGCGGGTATGGAGTTGCAACAGGAGGACCGTTAGCTTGGGGATTGT GCTACAACAAAGAGCTGAGCCCAGACAAAGTGTACTGCGACGACTACTACAAGCTCGACTATCCTTGCACTCCTGGTGCTTCCTACCATGGCCGTGGTGC TCTGCCTCTTTACTGGAACTACAACTATGGGAAAACAGGGGAAGCCCTGAAAGTGGACCTGTTGAACCATCCAGAGTACATAGAGAACAACGCGACCTTA GCATTCCAAGCCGCAATGTGGAAGTGGATGACCCCAGACAAGAAGAATAAGGTCCCCTCAGCACACGACGTCTTCGTCGGAAACTGGAAGCCCACCAAGA ATGACACTCTGGCGAAAAGGGTACCCGGGTTCGGAGCCACCATGAACGTCCTCCACGGAGAGCAAATGTGCGGGAAAGGGGACGACGACGCCATGAACAA CGTGGTGTCTCATTACTTGTACTACCTTGACTTGATGGGCGTTGGGAGGGAGGAAGCTGGCCCTCATGAAGTTCTTACCTGTGGTGAACAGTTGCCCTTT GGCAAAGCTCCTACTGCTACTTCTTCTTGA
AA sequence Show only first row Show all	>Lus10016872 pacid=23179038 polypeptide=Lus10016872 locus=Lus10016872.g ID=Lus10016872.BGIv1.0 annot-version=v1.0 MGQKELAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKELSPDKVYCDDYYKLDYPCTPGASYHGRGALPLYWNYNYGKTGEALKVDLLNHPEYIENNATL AFQAAMWKWMTPDKKNKVPSAHDVFVGNWKPTKNDTLAKRVPGFGATMNVLHGEQMCGKGDDDAMNNVVSHYLYYLDLMGVGREEAGPHEVLTCGEQLPF GKAPTATSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10016872 [exp]	0	1
AT1G24030			Protein kinase superfamily pro...		Lus10010703 [exp]	1.0	0.9793
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10032728 [exp]	1.7	0.9724
AT1G13900			Purple acid phosphatases super...		Lus10004661 [exp]	4.9	0.9660
					Lus10011724 [exp]	5.1	0.9791
AT3G15480			Protein of unknown function (D...		Lus10043091 [exp]	5.6	0.9550
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10018801 [exp]	5.7	0.9644
AT5G14940			Major facilitator superfamily ...		Lus10032177 [exp]	6.9	0.9577
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10018005 [exp]	7.5	0.9714
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10037737 [exp]	7.7	0.9701
AT2G37900			Major facilitator superfamily ...		Lus10024340 [exp]	8.0	0.9615

Compare expression of checked genes

Lus10016872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.