Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16150 852 / 0 CAMTA calmodulin binding;transcription regulators (.1) AT3G16940 803 / 0 CAMTA calmodulin binding;transcription regulators (.1) AT2G22300 296 / 7e-86 CAMTA SR1, CAMTA3 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) AT5G64220 259 / 8e-73 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) AT5G09410 257 / 4e-72 CAMTA CAMTA1, EICBP.B calmodulin-binding transcription activator 1, ethylene induced calmodulin binding protein (.1.2.3) AT1G67310 233 / 8e-64 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) AT4G35450 52 / 1e-06 AKR2A, AFT, AKR2 ankyrin repeat-containing protein 2 (.1.2.3.4.5) AT2G17390 50 / 4e-06 AKR2B ankyrin repeat-containing 2B (.1) AT2G14255 48 / 2e-05 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT2G03430 47 / 2e-05 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037738 [exp] 1532 / 0 AT4G16150 1033 / 0.0 calmodulin binding;transcription regulators (.1) Lus10036455 [exp] 1066 / 0 AT4G16150 845 / 0.0 calmodulin binding;transcription regulators (.1) Lus10041126 [exp] 553 / 0 AT4G16150 430 / 1e-137 calmodulin binding;transcription regulators (.1) Lus10041704 [exp] 310 / 7e-91 AT2G22300 912 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Lus10024044 [exp] 301 / 9e-88 AT2G22300 822 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Lus10003405 [exp] 286 / 8e-82 AT5G64220 1028 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10036162 [exp] 284 / 6e-80 AT5G64220 818 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10003119 [exp] 272 / 8e-78 AT1G67310 640 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Lus10011352 [exp] 273 / 2e-77 AT1G67310 637 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G141700 [exp] 872 / 0 AT4G16150 1038 / 0.0 calmodulin binding;transcription regulators (.1) Potri.008G107900 [exp] 866 / 0 AT4G16150 1026 / 0.0 calmodulin binding;transcription regulators (.1) Potri.005G075100 [exp] 294 / 1e-84 AT2G22300 976 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.007G093400 [exp] 288 / 2e-82 AT2G22300 991 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.001G057800 [exp] 280 / 4e-80 AT1G67310 832 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.010G153100 [exp] 267 / 1e-75 AT5G64220 676 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Potri.003G170600 [exp] 229 / 9e-63 AT1G67310 856 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.008G099733 [exp] 79 / 9e-18 AT5G64220 97 / 1e-25 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Potri.004G210000 [exp] 57 / 2e-08 AT2G17390 418 / 1e-146 ankyrin repeat-containing 2B (.1) Potri.004G210100 [exp] 57 / 3e-08 AT2G17390 430 / 3e-151 ankyrin repeat-containing 2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif CL0159 [flax] [poplar] E-set PF01833 [flax] [poplar] TIG IPT/TIG domain CL0159 [flax] [poplar] PF03859 [flax] [poplar] CG-1 CG-1 domain
Representative CDS sequence Show only first row Show all	>Lus10016873 pacid=23179124 polypeptide=Lus10016873 locus=Lus10016873.g ID=Lus10016873.BGIv1.0 annot-version=v1.0 ATGGCTAGTTTAGTGGCGACGGATGTCCCGGCGCGGTTAGTCGGCTCGGAGATTCACGGATTCCACACTCTTCAAGATTTGGATATTTGGAACATATTGG ACGAAGCAAGATCGCGGTGGCTTCGTCCCAATGAAATTCATGCCATCTTATGTAACCACAAGTATTTCACCATATTTGTGAAGCCTGTGAACTTGCCCAA GAGTGGCACCATTCTCTTGTTCGACCGTAAGATGCTTAGGAACTTCAGGAAAGATGGTCATAACTGGAAGAAGAAAACAGATGGGAAGACTGTTAAAGAA GCTCACGAACATTTAAAATTGCAGAGCTCTCCTGTCACGCCTTTGAATTCAAATTCAAGCTCAGTATCTGACCCGTCTACTCCTTGGCCCTCAGCAGAAG AATTTGATTCTGGAGCTGGCAATGCATATCCTGCAGGAGAGAAAGAATTTATAGGTGATAATATTTGCAAACTTCATTGGAAACATTTCCTCTTCTCAAC AGATCCTGGTCTGTTCCCTGTGAAAGATCATCAGTTGAGGCTCCATGAGATTAACACACTTGAATGGGATGACCTCGTGGCAGGTGATCCCAACAACTTA ACAACCTTCCAAGGAGATGTGAGCTCCTATCTTGTCAATCAGAATCAAATTGCTGTGAACGGGTCTTCTTCTATTTATCAGAATTCCCTTTCAGCCAGTA ATATATCTGATGGTGTTACTTCTATAAATCAAATCATTGACCCATGCCTCAACAGCGGGACTACATATAGCAGTACCGCAGATGGGACCTATACTCAGAC AGCTAATCTCCTAATAAACTCAAAGACGCAAAGTACAGATCGTCAAGCAGTGGCCCATGATTCTACACTGGACTATTTGGTCGATAATGGTTTGCAAAGT CAGGATAGTTTTGGAAGGTGGATGGATGATGTAATGGCCAAATCTGCAGATTCTCTAGATGACCATCTGCTTCAGCCTCTTATCTCTTCCGGCGATGGGT TATCTACCTCTCCAGCAAGTGTCCAACACCAATATTCTGCTGACCACTCATTTGTCATAACTGATGTCTCACCTTCATGGGGCTTTTCAGATGAGACAAC AAAGGTTCTCGTAACTGGTTATTTCCATGACCAGTTTGTGCATCTGGGAAACTCCGATCTGGTTTGTGTCTGTGGTGATGATTTTGTTCCTACTGAGGTT GTCCAATCTGGCGTATATCGTTGTTTCTTACCACCACACTCCCCCGGATTGGTGAATCTTTGTCTCAGTTTGGATGGTCATAAACCACTCAGCCAAGTCT TGAATTTTGAGTACCGCAGGCCTGCACAGCATGATGTTGTGGTCTCTAAAGATGAAAACTCTAAGTGGGAGCACTTCCATCTCCAGATGCGTCTTGCTTG CCTTCTTCTATCTACATCCAAGAGCCTAAACCTGCTAAGCAGTAAAATATCCCCAAGTAACTTGAAGGAGGCTAAGAAGTTTGCCAGTAGAACATCCACC ATTTCCGGAAATTGGTCATTTTTATTCAAGTCTATTGAGGAGAATAGGGTTTCTCTGGCACAAGCCAAAGACGACATGTTTGAAATTACTTTGAAGAATA TACTAAACGAGTGGTTGTTGGAGAGAGTGGCTGAAGGCGGTAAAGCCACCGAATATGATACTGAAGGCCTAGGAGTAATTCACCTGTGTGCTAGACTTGG ATATACTTGGGCTATCTATTTGTATTCATGGTCAGGCTTATCGTTAGATTACCGCGACAAACATGGATGGACAGCTCTTCACTGGGCAGCATATTACGGA AGGGAGAGAATGGTGGCAGTTCTCCTATCTGCTGGAGCAAAACCGAACTTGGTTACAGATCCAACTGCAGAGAATCCTGGTGGATGCACTCCTGGCGATC TAGCAGAAGGGAGAGGTTACGAAGGCTTGGCAGCTTATCTATCTGAAAAGGCTCTACTATCACATTTCAAGGATATGTCAATAGCAGGAAATGTTTGTGG CACGCTACAATCAGCCTCTGTGGAACCCGGAACAGCTGAAAACCTGACGGAGGAGGAGCTGTACCTCAAGGATGCATTGGCTGCTTACCGAACAGCTGCT GATGCAGCAGGTCGGATACAGGCAGCATTCAGAGAACAGTCCATGAAGTTACGGGCGAAAGCAGTTGAGGTATCGAGTCCAGAGGATGAAGCAAGGAGCA TAGTTGCAGCAATGAAGATTCAACATGCATTTCGCAACTACGAGACCAAGAAAAAGATGGCTGCTGTGGTTCGCATCCAGTACAGGTTCCGCACTTGGAA AATGCGGAGAGAATTCGTCAACTTGCGCCGCCAAACCATTAGAATTCAAGCTGCATTCCGAGGGTTTCAAGTAAGGAGACAGTACGGGAAGATTCTGTGG TCTGTTGGAGTGCTTGAGAAAGCAGTGCTGAGGTGGCGTATGAAGAGAAAGGGCCTCCGCAACCTTAAAGTAGAAGCACCCGAATCGATTCAAGAAGATG GGCAGCCAAGCGACACAGAGGAGGAATTCTTCAAAACCGGGAGGAAACATGCCGAGGAGCGTGTGGAGAGAGCTGTTGTGACAGTTCAATCCATGTTCCG ATCCAAGAAGGCACAAGCAGAGTACAGAAGGATGAAACTCACCTATAACGAAGCTTCGCTGGAATATGAAGGCCTTCTTTCGCCAGACACTGATATGGGT AAATGA
AA sequence Show only first row Show all	>Lus10016873 pacid=23179124 polypeptide=Lus10016873 locus=Lus10016873.g ID=Lus10016873.BGIv1.0 annot-version=v1.0 MASLVATDVPARLVGSEIHGFHTLQDLDIWNILDEARSRWLRPNEIHAILCNHKYFTIFVKPVNLPKSGTILLFDRKMLRNFRKDGHNWKKKTDGKTVKE AHEHLKLQSSPVTPLNSNSSSVSDPSTPWPSAEEFDSGAGNAYPAGEKEFIGDNICKLHWKHFLFSTDPGLFPVKDHQLRLHEINTLEWDDLVAGDPNNL TTFQGDVSSYLVNQNQIAVNGSSSIYQNSLSASNISDGVTSINQIIDPCLNSGTTYSSTADGTYTQTANLLINSKTQSTDRQAVAHDSTLDYLVDNGLQS QDSFGRWMDDVMAKSADSLDDHLLQPLISSGDGLSTSPASVQHQYSADHSFVITDVSPSWGFSDETTKVLVTGYFHDQFVHLGNSDLVCVCGDDFVPTEV VQSGVYRCFLPPHSPGLVNLCLSLDGHKPLSQVLNFEYRRPAQHDVVVSKDENSKWEHFHLQMRLACLLLSTSKSLNLLSSKISPSNLKEAKKFASRTST ISGNWSFLFKSIEENRVSLAQAKDDMFEITLKNILNEWLLERVAEGGKATEYDTEGLGVIHLCARLGYTWAIYLYSWSGLSLDYRDKHGWTALHWAAYYG RERMVAVLLSAGAKPNLVTDPTAENPGGCTPGDLAEGRGYEGLAAYLSEKALLSHFKDMSIAGNVCGTLQSASVEPGTAENLTEEELYLKDALAAYRTAA DAAGRIQAAFREQSMKLRAKAVEVSSPEDEARSIVAAMKIQHAFRNYETKKKMAAVVRIQYRFRTWKMRREFVNLRRQTIRIQAAFRGFQVRRQYGKILW SVGVLEKAVLRWRMKRKGLRNLKVEAPESIQEDGQPSDTEEEFFKTGRKHAEERVERAVVTVQSMFRSKKAQAEYRRMKLTYNEASLEYEGLLSPDTDMG K

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16940	CAMTA		calmodulin binding;transcripti...		Lus10016873 [exp]	0	1
AT5G05200			Protein kinase superfamily pro...		Lus10012865 [exp]	4.2	0.8661
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10004927 [exp]	4.7	0.8556
AT5G24320			Transducin/WD40 repeat-like su...		Lus10032436 [exp]	6.6	0.8440
AT2G40130			Double Clp-N motif-containing ...		Lus10040206 [exp]	9.6	0.8487
AT1G07220			Arabidopsis thaliana protein o...		Lus10040665 [exp]	13.0	0.8314
AT2G16230			O-Glycosyl hydrolases family 1...		Lus10032719 [exp]	14.1	0.8424
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Lus10022485 [exp]	18.1	0.8287
AT3G45290		ATMLO3, MLO3	MILDEW RESISTANCE LOCUS O 3, S...		Lus10036121 [exp]	20.6	0.8267
AT2G15080		AtRLP19	receptor like protein 19 (.1.2...		Lus10039512 [exp]	24.8	0.8159
AT5G05200			Protein kinase superfamily pro...		Lus10030509 [exp]	25.7	0.8220

Compare expression of checked genes

Lus10016873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.