Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02080 339 / 2e-120 ASAR1, ATSARA1C, ATSAR2 secretion-associated RAS super family 2 (.1) AT1G56330 330 / 5e-117 ATSAR1B, ATSAR1, SAR1, ATSARA1B ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS 1B, secretion-associated RAS 1B (.1) AT3G62560 326 / 3e-115 Ras-related small GTP-binding family protein (.1) AT1G09180 315 / 3e-111 ATSARA1A, ATSAR1 SECRETION-ASSOCIATED RAS 1, secretion-associated RAS super family 1 (.1) AT1G02620 187 / 2e-61 Ras-related small GTP-binding family protein (.1) AT2G24765 77 / 1e-17 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT3G49870 73 / 5e-16 ATARLA1C ADP-ribosylation factor-like A1C (.1) AT5G67560 72 / 1e-15 ATARLA1D ADP-ribosylation factor-like A1D (.1) AT2G47170 69 / 9e-15 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT3G62290 69 / 1e-14 ATARFA1E ADP-ribosylation factor A1E (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037739 [exp] 346 / 3e-123 AT4G02080 389 / 2e-140 secretion-associated RAS super family 2 (.1) Lus10036456 [exp] 336 / 4e-119 AT4G02080 386 / 3e-139 secretion-associated RAS super family 2 (.1) Lus10010926 [exp] 332 / 2e-117 AT4G02080 385 / 9e-139 secretion-associated RAS super family 2 (.1) Lus10031408 [exp] 332 / 2e-117 AT4G02080 385 / 9e-139 secretion-associated RAS super family 2 (.1) Lus10041127 [exp] 317 / 2e-111 AT4G02080 369 / 1e-131 secretion-associated RAS super family 2 (.1) Lus10014991 [exp] 74 / 5e-16 AT5G52210 320 / 1e-112 GTP-binding protein 1 (.1.2) Lus10038871 [exp] 74 / 2e-15 AT5G52210 326 / 3e-113 GTP-binding protein 1 (.1.2) Lus10031436 [exp] 69 / 1e-14 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10026383 [exp] 69 / 1e-14 AT2G18390 317 / 3e-112 TITAN 5, HALLIMASCH, ARF-LIKE 2, ADP-ribosylation factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G141900 [exp] 330 / 4e-117 AT4G02080 384 / 3e-138 secretion-associated RAS super family 2 (.1) Potri.005G019100 [exp] 330 / 1e-116 AT4G02080 357 / 1e-127 secretion-associated RAS super family 2 (.1) Potri.008G107800 [exp] 328 / 3e-116 AT4G02080 338 / 4e-120 secretion-associated RAS super family 2 (.1) Potri.013G010000 [exp] 325 / 5e-115 AT4G02080 308 / 3e-108 secretion-associated RAS super family 2 (.1) Potri.013G009900 [exp] 323 / 3e-114 AT4G02080 308 / 3e-108 secretion-associated RAS super family 2 (.1) Potri.005G015400 [exp] 317 / 6e-112 AT4G02080 299 / 7e-105 secretion-associated RAS super family 2 (.1) Potri.006G171500 [exp] 77 / 7e-18 AT2G24765 353 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.018G096077 [exp] 77 / 8e-18 AT2G24765 354 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.018G013700 [exp] 75 / 6e-17 AT2G24765 336 / 6e-120 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.006G267800 [exp] 75 / 6e-17 AT2G24765 333 / 8e-119 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00025 [flax] [poplar] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Lus10016874 pacid=23179112 polypeptide=Lus10016874 locus=Lus10016874.g ID=Lus10016874.BGIv1.0 annot-version=v1.0 ATGTTCCTATTCGACTGGTTCTATGGAATTCTCGCATCTCTTGGGCTATGGCAGAAAGAGGCCAAGATCCTCTTCTTGGGTCTCGACAACGCCGGCAAGA CCACTCTTCTTCACATGTTGAAAGACGAGGTTCGTTCCGCCCCGATCTCTAGACTAGTGCAACATCAGCCGACCCAGCATCCTACTTCAGAGGAGTTGAG TATTGGCAAAATCAAGTTCAAAGCTTTTGATTTGGGCGGCCATCAGATCGCTCGCCGCGTCTGGAAAGACTATTATGCCAAGGTTGATGCCGTGGTCTAC CTTGTTGATGCCTACGACAAGGAGAGGTTTGCAGAGTCGAAGAAGGAGCTGGACGCCCTCTTGTCAGACGAGGGCCTTACCAGTGTTCCATTCCTGATCC TAGGCAACAAAATCGACATCCCCTATGCAGCATCGGAAGACGAGCTCCGGTACCATCTAGGGCTGTCGAATTTCACAACCGGAAAGGGCAAGGTGAACCT CACGGACTCCAACGTCCGGCCTCTTGAGGTTTTCATGTGCAGCATTGTCCGGAAGATGGGTTACGGAGAAGGCTTCAAGTGGCTCTCTCAGTACATCAAG TAG
AA sequence Show only first row Show all	>Lus10016874 pacid=23179112 polypeptide=Lus10016874 locus=Lus10016874.g ID=Lus10016874.BGIv1.0 annot-version=v1.0 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDEVRSAPISRLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVY LVDAYDKERFAESKKELDALLSDEGLTSVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10016874 [exp]	0	1
AT1G71990		ATFT4, ATFUT13,...	ARABIDOPSIS FUCOSYLTRANSFERASE...		Lus10009440 [exp]	3.2	0.8545
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10037739 [exp]	3.9	0.7940
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Lus10018355 [exp]	6.8	0.8136
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10010619 [exp]	15.0	0.8056
AT3G05320			O-fucosyltransferase family pr...		Lus10018291 [exp]	16.5	0.8118
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10010618 [exp]	20.1	0.7784
AT4G16380			Heavy metal transport/detoxifi...		Lus10039073 [exp]	24.9	0.7888
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10035360 [exp]	28.8	0.7361
AT5G40250			RING/U-box superfamily protein...		Lus10014526 [exp]	31.4	0.7478
AT5G66280		GMD1	"GDP-D-mannose 4,6-dehydratase...		Lus10028373 [exp]	32.8	0.7908

Compare expression of checked genes

Lus10016874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.