Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27300 463 / 4e-156 S-locus lectin protein kinase family protein (.1) AT4G21380 441 / 3e-147 ARK3 receptor kinase 3 (.1) AT1G65800 436 / 2e-145 ARK2 receptor kinase 2 (.1) AT1G65790 425 / 3e-141 ARK1 receptor kinase 1 (.1) AT4G27290 423 / 4e-141 S-locus lectin protein kinase family protein (.1) AT1G11340 425 / 2e-140 S-locus lectin protein kinase family protein (.1) AT4G21390 422 / 1e-139 B120 S-locus lectin protein kinase family protein (.1) AT1G11410 418 / 2e-138 S-locus lectin protein kinase family protein (.1) AT1G11330 411 / 8e-136 S-locus lectin protein kinase family protein (.1.2) AT1G61610 402 / 3e-132 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016860 [exp] 771 / 0 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10037732 [exp] 765 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10037729 [exp] 760 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 759 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016862 [exp] 733 / 0 AT4G27290 702 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037731 [exp] 675 / 0 AT4G27290 644 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037733 [exp] 569 / 0 AT4G21380 402 / 9e-134 receptor kinase 3 (.1) Lus10038557 [exp] 486 / 1e-164 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 484 / 3e-164 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G411000 [exp] 563 / 0 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411100 [exp] 560 / 0 AT4G27290 746 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G418100 [exp] 526 / 0 AT4G27290 778 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411300 [exp] 523 / 1e-179 AT4G27290 759 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411400 [exp] 523 / 1e-179 AT4G27290 770 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G410800 [exp] 516 / 6e-177 AT4G27290 758 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411700 [exp] 509 / 2e-174 AT4G27290 800 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125151 [exp] 509 / 4e-174 AT4G27290 757 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 505 / 2e-172 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125351 [exp] 501 / 3e-171 AT4G27290 748 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Lus10016876 pacid=23179043 polypeptide=Lus10016876 locus=Lus10016876.g ID=Lus10016876.BGIv1.0 annot-version=v1.0 ATGACCCTAGAGGAGTGCAGGGTCAACTGTTTGATGAATTGTTCATGTATGGCGTATACTAGTACGGATGTTCGAGGGGCTGGAAGTGGCTGCTCCATTT GGTATGGTGATCTAACCGATATGACACAGTTTACAGGAGGGGGACAAGAGGTATACATTCGAATGCCTGCTTCTGAATTAGTGAGCAGCAATAAGGTAAA AACAAGGGTAGGCGCCATTGTTGGAGCTATGATTGGCACTCTGCTTGGGTTGCTTGCCATTGTCTATTTCATCCCCAAGATGAAAGCAAAGTGCAGACCA AGAGCCAGCAACAGGATGAGTACTGTCACACTTGGCAGAAAAGATGAAGTAGAGCCACCATTGCTTGAACTAGCTACAATAGTTGATGCTACTGACAACT TTTCATCCGCCAACAAGTTAGGGAAAGGTGGATTTGGACCTGTCTATGGTGTTATGGCAGGTGGACAAGAAATTGCAGTGAAGAGGCTATCAAGCAGTTC AGGGCAGGGAATGATGGAGTTCAAGAATGAAGTACTACTGATTTCAAAACTACAACACAGGAATCTTTTCAAACTTCTAGGATGTTGTATACAGGGAGAT GAGAAGATGCTGGTTTATGAATACATGCCTAACAAATGCGTCGACTCCTTCATTTTTGATGACAGGAGGAGTGGATTGCTGGATTGGACGAAGCGTTTCA ACATAATATGTGGGATAGCTAGAGGGTTAATATGTCGGATAACTAGAGGGTTAATGTATCTTCACCAGGATTCAAGATTGAGAATCATACATAGAGATTT AAAAGCAAGTAACGTGCTCCTTGATTATGAATTGAACCCAAAAATCTCAGATTTTGGCATGGCTAGAAGCTTTAGAGGAGATAATACTGAAAGCAACACA AACAGGGTGATCGGAACATATGGATACATGGCACCCGAATATGCGGCTGATGGATTATTCTCGATCAAATTAGACGTTTTTAGTTTTGGAATTCTCGTAC TAGAGATTATAAGTCGGAAGAAAAGTAGAGATTTTTATCATGTTGACCAGAGTTTGAACCTTATTGGATATGCCTGGAAACTATGGAAGGAAGGGAAGGC AATAGAAATAATGGATTCGTTATTAGAAAAGGAGTCTCGTGAAAACGTGTCACAAGTGATGAGATGCATTCATATTGGTTTATTATGTGTTCAAAATTGT GCAGAGGACAGACCCATCATGGGAAATGTGATTGTAATGTTGGGAGGAGGAGAAGAAACTATTGCGCTACTGCCTTCACCAAAAGAGCCTGGATTCTTTA ATGTTAAAGATCCTTTTTATGTGAAAGCTTCATCCTCATACATCTTTCCGTCGTCTTCTACTAATGAAATGAGTTTCACAGTGTTAGAAGCCCGTTGA
AA sequence Show only first row Show all	>Lus10016876 pacid=23179043 polypeptide=Lus10016876 locus=Lus10016876.g ID=Lus10016876.BGIv1.0 annot-version=v1.0 MTLEECRVNCLMNCSCMAYTSTDVRGAGSGCSIWYGDLTDMTQFTGGGQEVYIRMPASELVSSNKVKTRVGAIVGAMIGTLLGLLAIVYFIPKMKAKCRP RASNRMSTVTLGRKDEVEPPLLELATIVDATDNFSSANKLGKGGFGPVYGVMAGGQEIAVKRLSSSSGQGMMEFKNEVLLISKLQHRNLFKLLGCCIQGD EKMLVYEYMPNKCVDSFIFDDRRSGLLDWTKRFNIICGIARGLICRITRGLMYLHQDSRLRIIHRDLKASNVLLDYELNPKISDFGMARSFRGDNTESNT NRVIGTYGYMAPEYAADGLFSIKLDVFSFGILVLEIISRKKSRDFYHVDQSLNLIGYAWKLWKEGKAIEIMDSLLEKESRENVSQVMRCIHIGLLCVQNC AEDRPIMGNVIVMLGGGEETIALLPSPKEPGFFNVKDPFYVKASSSYIFPSSSTNEMSFTVLEAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27300			S-locus lectin protein kinase ...		Lus10016876 [exp]	0	1

Compare expression of checked genes

Lus10016876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.