Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16950 901 / 0 PTLPD1, LPD1 lipoamide dehydrogenase 1 (.1.2) AT4G16155 885 / 0 dihydrolipoyl dehydrogenases (.1) AT1G48030 250 / 6e-76 mtLPD1 mitochondrial lipoamide dehydrogenase 1 (.1.2) AT3G17240 238 / 3e-71 mtLPD2, LPD2 lipoamide dehydrogenase 2 (.1.2.3) AT3G54660 160 / 2e-42 ATGR2, EMB2360, GR glutathione reductase (.1) AT3G24170 134 / 9e-34 ATGR1 glutathione-disulfide reductase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037741 [exp] 1028 / 0 AT3G16950 928 / 0.0 lipoamide dehydrogenase 1 (.1.2) Lus10032649 [exp] 241 / 3e-72 AT1G48030 892 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10043103 [exp] 238 / 2e-71 AT1G48030 889 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10037825 [exp] 234 / 1e-69 AT1G48030 922 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10017102 [exp] 233 / 2e-69 AT1G48030 918 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10018770 [exp] 159 / 5e-42 AT3G54660 879 / 0.0 glutathione reductase (.1) Lus10024857 [exp] 143 / 3e-36 AT3G54660 864 / 0.0 glutathione reductase (.1) Lus10011734 [exp] 134 / 1e-33 AT3G24170 863 / 0.0 glutathione-disulfide reductase (.1.2.3) Lus10000758 [exp] 115 / 2e-27 AT3G24170 776 / 0.0 glutathione-disulfide reductase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G142100 [exp] 912 / 0 AT3G16950 895 / 0.0 lipoamide dehydrogenase 1 (.1.2) Potri.008G107600 [exp] 901 / 0 AT3G16950 877 / 0.0 lipoamide dehydrogenase 1 (.1.2) Potri.008G100800 [exp] 256 / 3e-78 AT3G17240 868 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.010G151400 [exp] 217 / 1e-63 AT3G17240 817 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.015G037800 [exp] 149 / 2e-38 AT3G54660 872 / 0.0 glutathione reductase (.1) Potri.003G178200 [exp] 140 / 7e-36 AT3G24170 848 / 0.0 glutathione-disulfide reductase (.1.2.3) Potri.001G050000 [exp] 140 / 8e-36 AT3G24170 857 / 0.0 glutathione-disulfide reductase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0608 [flax] [poplar] Reductase_C PF02852 [flax] [poplar] Pyr_redox_dim Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10016877 pacid=23179027 polypeptide=Lus10016877 locus=Lus10016877.g ID=Lus10016877.BGIv1.0 annot-version=v1.0 ATGCAGACCTCGCTCAGTCTCTCAATCTCCAACTCCGCCGCCGCCGCCGGTCCCAGATCAGCCAGCGCTTTCTTCGATTCCAACTCAACTAGCGCTTTCT TCGATTCCAATCGTTTCCCTGCTCCTCCGTCCAAGCCTGTCAATCTCCGATTCTGTGGCCTCAGGAGGGAAGCATTGGGATTCTCCAGCTCTTCTTTGAC CTCCCGCCGCTCTATTACTTCCAAGCGTGTATCACGCGCAGCCTCGAACAACAAGGTTTCCGCTTCGCTTGCAAGTGGTAATGGCAGCACACTCAAGTCG TTTGATTACGATTTGATCATCGTCGGAGCTGGCGTTGGCGGCCACGGAGCTGCGCTTCATGCTGTCGAAAAGGGTTTAAAAACTGCAATTATTGAGGGTG ACGTCGTGGGAGGAACATGCGTAAACAGAGGTTGCGTTCCGTCGAAAGCTCTCCTCGCCGTCAGTGGCCGGATGCGGGAGCTTCAGAGCGAGCATCATTT GAAAGCTTTAGGCCTCCAGGTTTCAGCTGCTGGTTATGACAGACAAGGAGTTGCTGATCATGCTAACAATCTAGCTACGAAAATTCGTAGCAATTTGACA AATTCAATGAAGGCATTGGGTGTGGACATATTGACTGGCGTTGGCACAATCTTGGGTCCACAAAAGGTGAGAGTTGGGAAAGACAATATAGTGACTGGAA AAGACGTCATCATTGCTACTGGTTCTGTCCCTTTTGTCCCAAAGGGAATCGAAGTTGATGGGAAGACCGTCATTACAAGTGATCATGCCCTCAAACTGGA GTCTGTACCTGATTGGATAGCGATCGTTGGAAGTGGTTATATTGGTCTAGAGTTCAGTGATGTGTATACTGCACTTGGAAGTGAGGTGACATTCATTGAA GCTCTGGACCAGCTCATGCCTGGATTTGATCCTGAAATTGGGAAGTTGGCTCAAAGAGTTTTGATTAATCCTCGCAAAATTGACTACCACACTGGTGTCT TCGCAACCAAGATCACTCCAGCAAAAGATGGGAAGCCAGTCACTATAGAGCTTATTGATGCCAAAACCAAGGAGCCGAGAGACACTCTGGAGGTAGATGC AGCACTGATTGCAACCGGAAGAGCACCTTTCACAAACGGTCTTGGCTTGGAGAATATTGATGTGGCAACACAGCTTGGCTTTATTCCTGTGGATGAACGT ATGCGTGTTATTGATTCTAGAGGAGACCTGGTCCCTCACTTGTACTGTATTGGTGATGCCAACGGTAAAATGATGCTTGCCCATGCAGCCAGTGCACAAG GAATTTCAGTGGTGGAGCAACTAACTGGAAGAGACCACGTATTAAATCATTTAAGCATTCCAGCAGCTTGTTTCACTCATCCTGAAATCAGTATGGTTGG GCTAACAGAGCCTCAAGCAAGGGAAAAAGCTGAAGTAGAGGGATTTGAAATAGCTGTTGCTAAGACAAGTTTTAAGGCAAACACAAAGGCCTTAGCCGAA AATGAAGGAGAGGGTCTTGCTAAGTTGATATACAGACCTGACAATGGAGAGATTCTAGGTGTCCACATTTTTGGGCTGCATGCTGCAGATCTCATCCACG AAGCATCTAATGCTATAGCTTTAGGGACTCGCATTCAGGAGTTGAAGTTAGCAGTTCATGCACATCCTACACTTTCCGAAGTCCTTGACGAACTCTTCAA GTCGGCAAAGGTTAAGGAGCATGTTGGCACCCCAGTAGGCGAGGCTGTTGCAGTCTGA
AA sequence Show only first row Show all	>Lus10016877 pacid=23179027 polypeptide=Lus10016877 locus=Lus10016877.g ID=Lus10016877.BGIv1.0 annot-version=v1.0 MQTSLSLSISNSAAAAGPRSASAFFDSNSTSAFFDSNRFPAPPSKPVNLRFCGLRREALGFSSSSLTSRRSITSKRVSRAASNNKVSASLASGNGSTLKS FDYDLIIVGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHLKALGLQVSAAGYDRQGVADHANNLATKIRSNLT NSMKALGVDILTGVGTILGPQKVRVGKDNIVTGKDVIIATGSVPFVPKGIEVDGKTVITSDHALKLESVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIE ALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPRDTLEVDAALIATGRAPFTNGLGLENIDVATQLGFIPVDER MRVIDSRGDLVPHLYCIGDANGKMMLAHAASAQGISVVEQLTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEVEGFEIAVAKTSFKANTKALAE NEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQELKLAVHAHPTLSEVLDELFKSAKVKEHVGTPVGEAVAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16950		PTLPD1, LPD1	lipoamide dehydrogenase 1 (.1....		Lus10016877 [exp]	0	1
AT3G16950		PTLPD1, LPD1	lipoamide dehydrogenase 1 (.1....		Lus10037741 [exp]	2.8	0.8888
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10042707 [exp]	3.7	0.8967
AT5G40610			NAD-dependent glycerol-3-phosp...		Lus10022308 [exp]	4.0	0.8736
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Lus10026397 [exp]	4.4	0.9055
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028196 [exp]	7.3	0.8752
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10041467 [exp]	9.2	0.8925
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10034458 [exp]	10.4	0.8592
AT3G23790		AAE16	acyl activating enzyme 16, AMP...		Lus10023224 [exp]	10.7	0.8429
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Lus10019336 [exp]	19.1	0.8814
AT3G19740			P-loop containing nucleoside t...		Lus10017405 [exp]	20.0	0.8512

Compare expression of checked genes

Lus10016877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.