Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16160 189 / 1e-61 ATOEP16-2, ATOEP16-S Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1.2) AT2G28900 59 / 2e-11 OEP16, ATOEP16-L, ATOEP16-1 outer envelope protein 16, OUTER PLASTID ENVELOPE PROTEIN 16-L, outer plastid envelope protein 16-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037743 [exp] 313 / 6e-110 AT4G16160 186 / 3e-60 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1.2) Lus10016545 [exp] 64 / 3e-13 AT2G28900 185 / 4e-61 outer envelope protein 16, OUTER PLASTID ENVELOPE PROTEIN 16-L, outer plastid envelope protein 16-1 (.1) Lus10040810 [exp] 48 / 3e-07 AT2G28900 181 / 9e-60 outer envelope protein 16, OUTER PLASTID ENVELOPE PROTEIN 16-L, outer plastid envelope protein 16-1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G142300 [exp] 221 / 1e-74 AT4G16160 238 / 4e-81 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1.2) Potri.008G107200 [exp] 216 / 1e-72 AT4G16160 214 / 9e-72 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1.2) Potri.001G239900 [exp] 62 / 3e-12 AT2G28900 178 / 2e-58 outer envelope protein 16, OUTER PLASTID ENVELOPE PROTEIN 16-L, outer plastid envelope protein 16-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02466 [flax] [poplar] Tim17 Tim17/Tim22/Tim23/Pmp24 family
Representative CDS sequence Show only first row Show all	>Lus10016878 pacid=23179050 polypeptide=Lus10016878 locus=Lus10016878.g ID=Lus10016878.BGIv1.0 annot-version=v1.0 ATGAACGGTGACTATAGTGACGTGAAGTCGAGATCTACAACCACGTACAGCGTCTCTCATAAAGGGAGCCCCATGTTCGACCTCGGCCACCCTCTTCTCA ACCGTATTGCCGACAGCTTCATCAAGGCCGCCGGGATTGGAGTAGTTCAGGCGGTGTCTAAGGAGGCTTGTTTCACTGTCCTTGAAGGAATTAATGGTGG TAGTTCAGAAGGCCGTCCAACTGAAATCACCTCATCAGGTGCCAAGAAGCGTAACCGATTCCACGATCTCCACGGGGAAACAAACAGTAGAAGTCTTGAA GCCATTGTTAAGAACACGGGAAAGGAATCTCTACAATGGGGACTGGCTGCTGGTGTGTATTCGGGTCTCACCTATGGCTTGAAGGAAGCCCGTGGTTCTC ATGACTGGCAAAACAGTGCGGTGGCGGGTGCGATAACGGGAGTGGCAGTGGCGCTGACATCGGATGACGCTTCCCACGAGCAGATATTGCAGTGTGCTGT GACTGGAGCTGCCATTTCTACTGCTGCCAACCTTCTTTCCGGGATATTCTAA
AA sequence Show only first row Show all	>Lus10016878 pacid=23179050 polypeptide=Lus10016878 locus=Lus10016878.g ID=Lus10016878.BGIv1.0 annot-version=v1.0 MNGDYSDVKSRSTTTYSVSHKGSPMFDLGHPLLNRIADSFIKAAGIGVVQAVSKEACFTVLEGINGGSSEGRPTEITSSGAKKRNRFHDLHGETNSRSLE AIVKNTGKESLQWGLAAGVYSGLTYGLKEARGSHDWQNSAVAGAITGVAVALTSDDASHEQILQCAVTGAAISTAANLLSGIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16160		ATOEP16-2, ATOE...	Mitochondrial import inner mem...		Lus10016878 [exp]	0	1
AT5G01660			unknown protein		Lus10002863 [exp]	1.4	0.8829
AT2G14100		CYP705A13	"cytochrome P450, family 705, ...		Lus10024582 [exp]	6.8	0.8560
AT3G44910		ATCHX12	cation/H+ exchanger 12, cation...		Lus10040962 [exp]	7.4	0.8272
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10042436 [exp]	7.5	0.8342
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10032214 [exp]	9.8	0.8323
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10030403 [exp]	13.2	0.8089
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10002985 [exp]	14.5	0.8216
AT5G65020		ANNAT2	annexin 2 (.1.2)		Lus10024054 [exp]	15.6	0.6656
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025414 [exp]	16.7	0.7885
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10009917 [exp]	21.9	0.8008

Compare expression of checked genes

Lus10016878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.