Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49400 161 / 2e-48 zinc knuckle (CCHC-type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037745 [exp] 256 / 7e-86 AT5G49400 172 / 6e-53 zinc knuckle (CCHC-type) family protein (.1) Lus10037744 [exp] 256 / 7e-86 AT5G49400 172 / 6e-53 zinc knuckle (CCHC-type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G142400 [exp] 217 / 1e-70 AT5G49400 151 / 1e-44 zinc knuckle (CCHC-type) family protein (.1) Potri.008G107100 [exp] 209 / 1e-67 AT5G49400 147 / 4e-43 zinc knuckle (CCHC-type) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016879 pacid=23179079 polypeptide=Lus10016879 locus=Lus10016879.g ID=Lus10016879.BGIv1.0 annot-version=v1.0 ATGTCTAGTAAGAAAGAAGAGATCAAAGCGGCGGCATTGAATGCTGCTAAGGGACTGAGTCGTGCCCAGGCTGAACGAGCGGCAACTGCTGCTGCACGCA ATGTAAATGCCTATGGTCAAAAGGAAGAAGGGCCGAGTAGATGGCAGGAGAAGAGGGAAGCAAAGCGGCAGATGTATTTGATGAGTACGGAGAAGCAAGT GAGATTGGGGGAGAGAAAAGATGTCAAATCTTCCATGACTGCTGCCGGTGGCGGCACTGCTCAATGCCAGAAATGTTTCCAATCCGGGCACTGGACTTTC GAGTGCAAGAACGAGAGGGTTTACATGGCCAGACCCTCCCGTACCCAGCAGCTTAAGAACCCCAAGCTGAAAATGAAAGTTTCGGTGTCTTACGATCTGG AAGAACCCGAAACTGCTAACGAGGAGAAGGATAAGAAGAAGACGTCAGCTAAGAAGAGCAAGAGGAAGCATAGATCGGATTCTGGTTCGGGTAGCGACAG CGAGGCCTCGGTATTCGAATCTGATAGCGAGTCGTCATCAGTGACAGGATCGGAATCGGAATCTTCGTCAGGAGAGAGCAGTTCGGATTACAGTTCTTCT TCGGAGGAGGAAGAAAGAAGGCGGAGGAGGAAGAAGAAGAAGCAGAAGATGAAAAGTAGGCGGAGGAGATATACTTCGTCTTCCGAGTCTTCTGATTCGG ACTCTGGTTCGGAGTCGGACTCTGAGAAAAAGAGCAGCCGGCGGAAGAAGAGGCACAGCCGAAAGCGTTGA
AA sequence Show only first row Show all	>Lus10016879 pacid=23179079 polypeptide=Lus10016879 locus=Lus10016879.g ID=Lus10016879.BGIv1.0 annot-version=v1.0 MSSKKEEIKAAALNAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKREAKRQMYLMSTEKQVRLGERKDVKSSMTAAGGGTAQCQKCFQSGHWTF ECKNERVYMARPSRTQQLKNPKLKMKVSVSYDLEEPETANEEKDKKKTSAKKSKRKHRSDSGSGSDSEASVFESDSESSSVTGSESESSSGESSSDYSSS SEEEERRRRRKKKKQKMKSRRRRYTSSSESSDSDSGSESDSEKKSSRRKKRHSRKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10016879 [exp]	0	1
AT1G26270			Phosphatidylinositol 3- and 4-...		Lus10000011 [exp]	7.3	0.8554
AT2G45010			PLAC8 family protein (.1.2)		Lus10027214 [exp]	8.7	0.8505
AT5G52980			unknown protein		Lus10019043 [exp]	9.5	0.7562
AT1G70190			Ribosomal protein L7/L12, olig...		Lus10038367 [exp]	11.1	0.8630
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10040809 [exp]	11.2	0.8437
AT1G03910			unknown protein		Lus10027605 [exp]	13.4	0.8308
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10004946 [exp]	13.9	0.8445
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10002533 [exp]	15.5	0.8549
AT3G44260		AtCAF1a	CCR4- associated factor 1a, Po...		Lus10029416 [exp]	24.2	0.8087
AT4G32605			Mitochondrial glycoprotein fam...		Lus10043448 [exp]	25.3	0.8310

Compare expression of checked genes

Lus10016879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.