Plant FIBer expression Database

Lus10016880 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G16980 159 / 7e-52 NRPE9A, NRPD9A, NRPB9A RNA polymerases M/15 Kd subunit (.1)
AT4G16265 157 / 4e-51 NRPE9B, NRPD9B, NRPB9B RNA polymerases M/15 Kd subunit (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037747
[exp]
114 / 1e-33 AT3G16980 89 / 1e-23 RNA polymerases M/15 Kd subunit (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G106900
[exp]
168 / 1e-55 AT3G16980 216 / 1e-74 RNA polymerases M/15 Kd subunit (.1)
Potri.010G142500
[exp]
101 / 3e-29 AT4G16265 146 / 3e-47 RNA polymerases M/15 Kd subunit (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0167 Zn_Beta_Ribbon PF02150 RNA_POL_M_15KD RNA polymerases M/15 Kd subunit
Representative CDS sequence
>Lus10016880 pacid=23179054 polypeptide=Lus10016880 locus=Lus10016880.g ID=Lus10016880.BGIv1.0 annot-version=v1.0
ATGAGTACCATGAAATTCTGTCGCGAATGTAACAACATCCTTTACCCTAAAGAGGACAGGGATGAAAGGGTTCTTCTCTACGCTTGCCGTAACTGTGATC
ACCAGGAAGTTGCCGAGACATACTGTGTATATAGAAACGAGGTTCATCATTCTGCAGCAGAACGCACTCAGGTGTTGCAGGATGTAGCTGCCGATCCCAC
TCTCCCTCGCACCAAAGATGTTAGATGTGCTGTGTGTAAGCATCCTGAAGCTGTCTTTTTCCAGGAACTAGCAATGACATCATTGCTTGTGCTAGAACAA
GAATTAAGTAAGCGGGCTGGCAAAATCGTCCCCTCAAGTTGA
AA sequence
>Lus10016880 pacid=23179054 polypeptide=Lus10016880 locus=Lus10016880.g ID=Lus10016880.BGIv1.0 annot-version=v1.0
MSTMKFCRECNNILYPKEDRDERVLLYACRNCDHQEVAETYCVYRNEVHHSAAERTQVLQDVAADPTLPRTKDVRCAVCKHPEAVFFQELAMTSLLVLEQ
ELSKRAGKIVPSS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G16980 NRPE9A, NRPD9A,... RNA polymerases M/15 Kd subuni... Lus10016880
[exp]
0 1
AT1G19990 unknown protein Lus10033141
[exp]
5.3 0.9127
AT3G25150 Nuclear transport factor 2 (NT... Lus10022765
[exp]
5.9 0.9169
AT4G10630 Glutaredoxin family protein (.... Lus10008270
[exp]
9.2 0.9014
AT3G49660 AtWDR5a human WDR5 \(WD40 repeat\) hom... Lus10003487
[exp]
12.5 0.8905
AT2G37020 Translin family protein (.1.2) Lus10020710
[exp]
15.5 0.8936
AT1G70710 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolas... Lus10034199
[exp]
17.3 0.8823
AT5G23860 TUB8, b-TUB tubulin beta 8 (.1.2) Lus10040712
[exp]
17.7 0.8943
AT2G18510 EMB2444 embryo defective 2444, RNA-bin... Lus10041728
[exp]
18.9 0.8859
AT5G44500 Small nuclear ribonucleoprotei... Lus10023386
[exp]
22.6 0.8850
AT2G38730 Cyclophilin-like peptidyl-prol... Lus10026161
[exp]
23.2 0.8848

Lus10016880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.