Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49430 412 / 2e-123 WD40/YVTN repeat-like-containing domain;Bromodomain (.1) AT2G47410 289 / 3e-81 WD40/YVTN repeat-like-containing domain;Bromodomain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037748 [exp] 1546 / 0 AT5G49430 1224 / 0.0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G142700 [exp] 821 / 0 AT5G49430 1753 / 0.0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1) Potri.008G106800 [exp] 777 / 0 AT5G49430 1729 / 0.0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1) Potri.014G121100 [exp] 354 / 3e-103 AT2G47410 1507 / 0.0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [flax] [poplar] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Lus10016881 pacid=23179103 polypeptide=Lus10016881 locus=Lus10016881.g ID=Lus10016881.BGIv1.0 annot-version=v1.0 ATGCAGGACCTTCTTTGTGACTCAGGCATGATTCCTTATGAAGAACCGTACCAGAGCATATACCAAAAGAGGCGGTTAGGATCTATGGGGTTGGAGTGGA AACCACCATCTGTAAAATTTGCTATTGGGCCAGACTTCAGTCTTGACCCAGTGTACCATATATTTCCCTTGGCTGACTTGGATCTGCCGATTGAACCACT TCCTGAATTTGTTGATATCATGGATTGGGAACCCGAACAACAAATGCACAGTGATGATACTGATTCAGAGTACAATGTCCCTGAAGAATATTCTACTGGA GGTGAGCAAGGGAGCTTCAATTCGATTTCCTCTGGAGACTCAGAATGTAGTGCAGAAGATAGCATGGATGATGACAAAAATGATTTCCGTCGATCCAGAA AGAAAAAACACAGGGCTGATATTGAAGTGATCACTGCCTCTGGAAGACGTATCAAAAGGAGGAATTTGGATGATTCAGATGGAAATACGCTTAGACTTAA CCGAGCTAGGAAATCACAGGTTGTCCGGAAAACTTCTAAGAGGAAGTCCTCCAAATCTAAGGCATTGTTGAGACCTCAAAGAGCTCGAAGAGCTGCTGCT CAAGTTGCTCGTGACTCATTTATAAAAATTAAGGGAAAAGCTGCAGATGGTGAAGATGAAGATGGTTCAACAGGTGATGCATCGGAAAATGAATCTACAG AAGAGTCCGACATTGAGAGTGATGAATCAGATCTGTCGTCACCGAGTGAGCGTATCAGGTATTTGAAAGGGAAGGCTATTGCAGAATCTGAAGATATATC TCACAAGATGCAAGAAGGATTTCGGAAGAAATTGGTTCTTAAGCTTCCAGTCCGAAACAGTAGTAAGATTTTGACGCCAGAGAATGTTGCGCAGAAGGCT GATTTGGCCGGGTCAACATCAAATGCTCTGGAGAAAGCCTTGGAGGCTAACGGTAGTCATGTAAGCTCTCTGGTTCCTGGGTACCCTTCTGATGATGCGA ATATCGACACGTTAGAAGCAGGTGCAAACAACTCTGGCCAGATTGAAAAACATAACGAGGATATCAGATGGGGAGGTGTGAAGGTTCGTTCATCCAAACG ACAAAGATTAGATGAACCAGTGTCATCACCTGGTCGTACAAAATGCATCTTACGCTTCCGGAACTTCAAAGAAAAGGACATTGGTATTAATGGACACTTG AACGCTCCTGAGGATGATAACAATTTGCCTCATTCATTACTAGTAGAAGACCTTGATGATAAGACTGTTGAAGAAGTCCGAGTAGATGGTACAAACATTG CACTTGATGCCTCTGAGGTTGTGAATGGAAACACTGACGAACTGCCAATGGCCTCTCCCTTGGGGAACAATGGCCAGCAGGAACTCAAGGATACAATGCC TATCCCAACGAAGTTAAGGATCAAGCTCAAACCGTTGTCAGTTGGGAACCATGAAAATGGCGGTGGGTGTTACCCACCATCTGGAAGCCTCACTGAGATA AAGCAAAACCCCGACCGGGAAGAAGGGGATAGTCGAATTAGTCCAGAGTACAGGGTTGCTCCAGTCCAGAAATCAAGCGATCATGTTGATGAAACTTCTG GACCCACATTGGATGACTCAACAGGTGTTGATTCACGCCCGAAAAGGATGTACACAGCCGTTTATAGAAGATCAAAGACGGTTAGGGATAGAGCTAACTC GGAATGTGAAAGTGGTTCGAGGGAAGGGACATCAAATCCCAGTGAAGATCTTGGTGGTAGAACCGAAGTAACAAATGGACTACGGAGAACACGGTCCATG GGTACAAAGTTGTTAAAAGACGACCCAAAAAGTTCACAAAGTAATCTCAATACGCGCCATGAGCATGAGTCTGAGGATGCTCATAGAGATTCCCGCAATG GTTCTATAACCAGGGGGCAAATTGCAACTCAAGAATGGGGTTCAGGCTCCAGGGGAACTGTCAGAGTTAGATCTACTAGGAATAGGAGAACCAATTACAA TTTTCATGAGACTATTCACCATTCTAGTAAGCCAGTGTCTTGGTTAGTCCTGCCAAAGCATGAGGAAGGCTCTCGTTATATTCCTCAGCTCGGAGATGAA GTAGCATATTTGAGACAGGGTCATCAGGAGTACATTGATGAAATTCACAGCAAGGAAGTTGGGCCCTGGAAGTATCTGAAAGTGAATGTTAAGGACGTTG AGTTTTGTAGAGTTGAAGGTCTAGATTACGCGACTCTACCGGGTTCTGGGGATAGTTGCTGTAAAATGACCCTAAAATTTGTTGATCCTAATTCGGATGT CTACGAAAAGACGTTCAAGCTGACACTCCCTGAGCTGACTACCTTCCCAGATTTCATTGTTGAGAGAAGTAGATATGATGCTGCTATGCAGAGAAACTGG ACGTGCAGAGACAAGTGTATGGTTTGGTGGAATGATGAAGAAACTGGTGGTCAATGGTGGGATGGTCGAGTTCTTTCTATAAAGGAGAAATCTCCTGAAT TTCCACAGAGTCCATGGGAGCGGTATACAATAAAGTACAAGGACGACCCTGATAGAAACCATCTCCACAGTCCATGGGAGCTTTTTGATAAAGATACTAC TCTATGGGAACAGCCTCGTATCGACGATGACACCAACCTCAGCCTGCTTTCCGCCTTGGAAGAATTGGAGCATAAAGAAGAGGAGTCCTATGGTGTTCAA AAATTGAACAAGGTAGTTCAGAATTCCAAGTTCATTAACATGTTTCCGGTGCCGATATCTCCTGGTTTAATAAAGTCGAGGCTGGAGAACAACTACTACC GGAGTGTGGAGGCATGTAGGCATGATTTTAAAGTGATGTTCCAAAATGCAGAAGCTTACTTGGGGAAGAATCAAGCGGACTCGGTGAAAATTGAGCACCT GTCTAAATGGTTCAAAAAGACGTTAAAGTCACATAGCGTTCAGATACAATAG
AA sequence Show only first row Show all	>Lus10016881 pacid=23179103 polypeptide=Lus10016881 locus=Lus10016881.g ID=Lus10016881.BGIv1.0 annot-version=v1.0 MQDLLCDSGMIPYEEPYQSIYQKRRLGSMGLEWKPPSVKFAIGPDFSLDPVYHIFPLADLDLPIEPLPEFVDIMDWEPEQQMHSDDTDSEYNVPEEYSTG GEQGSFNSISSGDSECSAEDSMDDDKNDFRRSRKKKHRADIEVITASGRRIKRRNLDDSDGNTLRLNRARKSQVVRKTSKRKSSKSKALLRPQRARRAAA QVARDSFIKIKGKAADGEDEDGSTGDASENESTEESDIESDESDLSSPSERIRYLKGKAIAESEDISHKMQEGFRKKLVLKLPVRNSSKILTPENVAQKA DLAGSTSNALEKALEANGSHVSSLVPGYPSDDANIDTLEAGANNSGQIEKHNEDIRWGGVKVRSSKRQRLDEPVSSPGRTKCILRFRNFKEKDIGINGHL NAPEDDNNLPHSLLVEDLDDKTVEEVRVDGTNIALDASEVVNGNTDELPMASPLGNNGQQELKDTMPIPTKLRIKLKPLSVGNHENGGGCYPPSGSLTEI KQNPDREEGDSRISPEYRVAPVQKSSDHVDETSGPTLDDSTGVDSRPKRMYTAVYRRSKTVRDRANSECESGSREGTSNPSEDLGGRTEVTNGLRRTRSM GTKLLKDDPKSSQSNLNTRHEHESEDAHRDSRNGSITRGQIATQEWGSGSRGTVRVRSTRNRRTNYNFHETIHHSSKPVSWLVLPKHEEGSRYIPQLGDE VAYLRQGHQEYIDEIHSKEVGPWKYLKVNVKDVEFCRVEGLDYATLPGSGDSCCKMTLKFVDPNSDVYEKTFKLTLPELTTFPDFIVERSRYDAAMQRNW TCRDKCMVWWNDEETGGQWWDGRVLSIKEKSPEFPQSPWERYTIKYKDDPDRNHLHSPWELFDKDTTLWEQPRIDDDTNLSLLSALEELEHKEEESYGVQ KLNKVVQNSKFINMFPVPISPGLIKSRLENNYYRSVEACRHDFKVMFQNAEAYLGKNQADSVKIEHLSKWFKKTLKSHSVQIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10016881 [exp]	0	1
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040891 [exp]	2.0	0.9022
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10032833 [exp]	2.4	0.8994
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10038081 [exp]	4.5	0.8902
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10024057 [exp]	4.9	0.8985
AT5G58100			unknown protein		Lus10027581 [exp]	7.5	0.8840
AT2G04860			Tetratricopeptide repeat (TPR)...		Lus10032904 [exp]	8.2	0.8273
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10016683 [exp]	8.4	0.8885
AT1G34150			Pseudouridine synthase family ...		Lus10023799 [exp]	8.5	0.8659
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Lus10003960 [exp]	8.5	0.8727
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10036010 [exp]	8.7	0.8969

Compare expression of checked genes

Lus10016881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.