Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49430 942 / 0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1) AT2G47410 873 / 0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1.2) AT2G21390 82 / 5e-16 Coatomer, alpha subunit (.1) AT4G02730 77 / 4e-15 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT1G62020 79 / 6e-15 Coatomer, alpha subunit (.1) AT3G49660 76 / 8e-15 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 73 / 3e-13 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT2G43770 72 / 4e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT5G52820 66 / 4e-11 WD-40 repeat family protein / notchless protein, putative (.1) AT4G15900 65 / 9e-11 PRL1 pleiotropic regulatory locus 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037748 [exp] 1251 / 0 AT5G49430 1224 / 0.0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1) Lus10003487 [exp] 81 / 2e-16 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10011454 [exp] 82 / 1e-15 AT1G62020 2098 / 0.0 Coatomer, alpha subunit (.1) Lus10039636 [exp] 79 / 1e-15 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 78 / 2e-15 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 77 / 7e-15 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 74 / 1e-13 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10012230 [exp] 73 / 2e-13 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 72 / 5e-13 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G142700 [exp] 1001 / 0 AT5G49430 1753 / 0.0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1) Potri.008G106800 [exp] 989 / 0 AT5G49430 1729 / 0.0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1) Potri.014G121100 [exp] 894 / 0 AT2G47410 1507 / 0.0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1.2) Potri.005G148500 [exp] 82 / 1e-16 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 79 / 7e-16 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 79 / 7e-16 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G074800 [exp] 80 / 3e-15 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1) Potri.015G069700 [exp] 80 / 3e-15 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.019G096900 [exp] 76 / 2e-14 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G087200 [exp] 71 / 9e-13 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10016882 pacid=23179062 polypeptide=Lus10016882 locus=Lus10016882.g ID=Lus10016882.BGIv1.0 annot-version=v1.0 ATGGCACTTCAGAAGTACATTCCTTTGGGTAATACAACGCCTAACAGTATGAAGCCATTGAGCTTTCCCAGCAAGGTTTATGAGAATGCTCAACTGTCAG ATACGGGGGCACAATGCACCGTCGAGCAAGATGTCGATATTGACCTCAGGGAAGTCTATTTCTTAATCATGCATTTCCTTTCAGCTGGACTATGCCACAG AACTTATGGTCAGCTATGGAGTGAACTTCTTGAAAATCAACTTTTACCCAGAAGGTATCATGCTTGGTATTCAAGAACTGGAGCACATAGCAGGAAAGAC AATGATGATGGTCTATCATTTCCTCTGAGTTATGGTGACTTAGCAGAGAGGTACAAACATATTGAGAAAAATCATCTGGTTAACCTTCTGAAGCAGCTCT TGCTTAATACTGCATCACCCTCAGAAGGCTTGTTTGGTGGAAACACTTCAAATGCTGCCGCTGTTCCTACCCTTTTGGGCGCGGGATCCTTTTCGCTTCT GAGCCACGAGAGAGATAAGGGAAATGCTCAAGCCAAGTGTCCTGCTTACATGCGATGGCCTCACATGCTTGCTGATCAAGTCCGTGGTCTAAGCTTGAGG GAAATTGGAGGTGGCTTCACAAGACATCACCGCCCGCCTGCTATTCGTGCTGCTAGTTATGCTATTGCAAAGCCATCAACTATGGTGCAGAAAATGCAGA ACATTAAACGGTTGCGGGGCCATCGGAATGCAGTGTATTGTGCAATATTTGATCGATTAGGAAGATACGTGATAACTGGATCAGATGATCGCCTTGTCAA AGTTTGGTCCATGGAAACTGCATTTTGCTTAGCCAGTTGCCGTGGACATGAAGGGGATATCACCGACTTGGCAGTGAGCTCCAACAACGCGTTGGTGGCG TCTTCATCAAATGATTGTGTAATTCGTGTTTGGCGTTTGCCAGATGGATTGCCAATATCAGTTTTGCGTGGCCATACTGGAGCTGTTACTGCGATTGCAT TTAGTCCTAGGCCTGGATCTGTGTACCAGCTTCTCTCGTCTTCTGATGATGGCACATGTAGGATATGGGATGCTAGGTCATCCCCTTTCAAGCCACGTGT ATATGCTCCAAAGCCCCCCGATGCTGCAGGTGGAAAGAACAATGGTCCTTCATCAAGCGCTAGTCCACCGGTCCATCAAATCTTTTGCTGTGCATTTAAT GCTAGTGGAACAGTCTTTGTTACTGGTAGTTCTGATAATCTTGCAAGGGTGTGGAATGCTTGTAAATCGAACACGGAAGATGCAGATCAACCCAATCATG AGATGGATGTATTGGCTGGTCATGAGAATGATGTCAATTATGTTCAATTTAGGTTTTCTCAAGACTATATCGTGACCTGTTCTCGAGATGGCAGCGCGAT TATTTGGATTCCCAAATCTCGTAGATCACATGGGAAAGTTGGCCGCTGGACTCGAGCCTATCACCTTAAAGTCCCTCCTCCGCCTATGCCTCCTCAGCCA GCACGAGGAGGCCCACGACAGAGAATGCTTCCAACTCCACGTGGTGTTAACATGATTGTGTGGAGCCTTGATAATCGTTTTGTCCTTGCAGCTATTATGG ATTGCAGAATTTGTGTGTGGAATGCTTCTGATGGTAGCTTGGTGCATTCTTTGACTGGTCATACTGATTCAACGTATGTGCTGGATGTTCATCCTTTCAA CCCTCGCATTGCCATGAGTGCTGGATATGATGGGAAGACGATAGTATGGGATATCTGGGAGGGCAAGCCAATCCGAACATATGAAATCTCACACTTCAAG TTAGTTGATGGGAAGTTTTCTCCGGATGGCACTTCCATCATACTGTCGGATGATGTTGGTCAGTTATATATATTAAACACAGGTCAAGGAGAGTCTCAAA AAGATGCCAAGTATGACCAGTTTTTCCTGGGTGATTATCGTCCCGTGATACAAGATACCTACGGAAATGTAGTTGATCAGGTATGCTGA
AA sequence Show only first row Show all	>Lus10016882 pacid=23179062 polypeptide=Lus10016882 locus=Lus10016882.g ID=Lus10016882.BGIv1.0 annot-version=v1.0 MALQKYIPLGNTTPNSMKPLSFPSKVYENAQLSDTGAQCTVEQDVDIDLREVYFLIMHFLSAGLCHRTYGQLWSELLENQLLPRRYHAWYSRTGAHSRKD NDDGLSFPLSYGDLAERYKHIEKNHLVNLLKQLLLNTASPSEGLFGGNTSNAAAVPTLLGAGSFSLLSHERDKGNAQAKCPAYMRWPHMLADQVRGLSLR EIGGGFTRHHRPPAIRAASYAIAKPSTMVQKMQNIKRLRGHRNAVYCAIFDRLGRYVITGSDDRLVKVWSMETAFCLASCRGHEGDITDLAVSSNNALVA SSSNDCVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARSSPFKPRVYAPKPPDAAGGKNNGPSSSASPPVHQIFCCAFN ASGTVFVTGSSDNLARVWNACKSNTEDADQPNHEMDVLAGHENDVNYVQFRFSQDYIVTCSRDGSAIIWIPKSRRSHGKVGRWTRAYHLKVPPPPMPPQP ARGGPRQRMLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTDSTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGKPIRTYEISHFK LVDGKFSPDGTSIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPVIQDTYGNVVDQVC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10016882 [exp]	0	1
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10035973 [exp]	1.4	0.9784
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10032834 [exp]	2.0	0.9730
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10037748 [exp]	2.8	0.9692
AT1G17450			B-block binding subunit of TFI...		Lus10000374 [exp]	4.9	0.9604
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10035106 [exp]	5.7	0.9695
AT1G77800			PHD finger family protein (.1....		Lus10009785 [exp]	6.9	0.9562
AT1G77800			PHD finger family protein (.1....		Lus10024777 [exp]	7.7	0.9632
AT1G79540			Pentatricopeptide repeat (PPR)...		Lus10020852 [exp]	8.7	0.9403
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Lus10003868 [exp]	10.2	0.9570
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040892 [exp]	10.2	0.9656

Compare expression of checked genes

Lus10016882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.