Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16260 364 / 6e-126 Glycosyl hydrolase superfamily protein (.1) AT3G57270 279 / 2e-92 BG1 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) AT3G57260 269 / 1e-88 AtPR2, PR-2, PR2, BG2, BGL2 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) AT3G57240 259 / 7e-85 BG3 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) AT5G56590 220 / 1e-67 O-Glycosyl hydrolases family 17 protein (.1) AT5G20390 201 / 5e-62 Glycosyl hydrolase superfamily protein (.1) AT5G20340 198 / 7e-61 BG5 beta-1,3-glucanase 5 (.1) AT5G20330 193 / 4e-59 BETAG4 "beta-1,3-glucanase 4", beta-1,3-glucanase 4 (.1) AT3G15800 193 / 2e-58 Glycosyl hydrolase superfamily protein (.1) AT2G26600 192 / 4e-58 Glycosyl hydrolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002807 [exp] 270 / 1e-88 AT3G57240 339 / 7e-116 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10019801 [exp] 267 / 7e-88 AT3G57270 367 / 6e-127 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014109 [exp] 265 / 8e-87 AT3G57270 361 / 1e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014108 [exp] 269 / 6e-86 AT3G57270 366 / 3e-123 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014110 [exp] 254 / 4e-83 AT3G57270 359 / 2e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10027860 [exp] 236 / 2e-75 AT3G57260 322 / 4e-109 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) Lus10010091 [exp] 233 / 7e-71 AT1G02305 520 / 0.0 Cysteine proteinases superfamily protein (.1) Lus10031037 [exp] 218 / 2e-68 AT3G57240 312 / 3e-105 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10004869 [exp] 208 / 3e-64 AT2G27500 491 / 5e-174 Glycosyl hydrolase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G142800 [exp] 383 / 6e-133 AT4G16260 433 / 2e-152 Glycosyl hydrolase superfamily protein (.1) Potri.010G143166 [exp] 370 / 1e-128 AT4G16260 432 / 5e-153 Glycosyl hydrolase superfamily protein (.1) Potri.001G255100 [exp] 314 / 2e-106 AT4G16260 369 / 9e-128 Glycosyl hydrolase superfamily protein (.1) Potri.016G057600 [exp] 283 / 6e-94 AT3G57270 414 / 2e-145 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.016G057400 [exp] 274 / 2e-90 AT3G57270 416 / 4e-146 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.009G050300 [exp] 271 / 6e-90 AT4G16260 285 / 5e-95 Glycosyl hydrolase superfamily protein (.1) Potri.006G048100 [exp] 269 / 1e-88 AT3G57270 382 / 6e-133 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.006G046100 [exp] 263 / 3e-86 AT3G57270 370 / 4e-128 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.005G172000 [exp] 214 / 1e-66 AT1G77780 338 / 6e-115 Glycosyl hydrolase superfamily protein (.1) Potri.009G050401 [exp] 210 / 2e-66 AT4G16260 263 / 2e-87 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10016883 pacid=23179058 polypeptide=Lus10016883 locus=Lus10016883.g ID=Lus10016883.BGIv1.0 annot-version=v1.0 ATGGGCAACAACCTGCCGCCGCCGTCGGAAGTGGTATCGCTGTGCCAGCAGAACAACATATGGCGGATGAGGCTCTACGACCCAAACCGTGATGCTCTGT GGGCCCTTCGCGATTCGGGGATCGAAGTGACGATAGGTGTTCCCAACTCGGATCTGAAGCACCTCAACAACTGGGACGATGCATACTGGTGGGTGCAAGA ATACGTCAGGAACAACTGGCCCAACGTTAAGGTCAAATACATCGCCGTCGGCAACGAAGTCAGCCCTATGTACAACGCCGACCTTGCCTCCGCCGTGCTC CCGGCGATGAGGAACATTTACAACGCCTTGGTACAAATGGGCCTCCACGAACAAGTCAAGGTTTCAACAGCCATCGACATGACATTGTTGGCAAACTCAT ACCCACCCTCAGCAGGCGCGTTCCGGGACGACATAAGATGGTTCCTGGACCCAATCATCGGATTCCTAGGCAGCGTGAAAGCGCCACTGCTAGCCAACAT CTACACATACTTCAGCTACCGAGACAACCCGTCAACCATCTCCCTCCCTTACGCGCTCCTCTCCTCCCAGTCCGTGTCCGTGTGGGACAACGGCCTCGGC TACACCAACCTCTTCGACGCGATGCTCGACTCGCTCTACTCGGCCGTGGAGCGCCTGGGAGGGTGGTCCGTGGAGGTGGTGGTGTCCGAGAGCGGGTGGC CCTCGGCCGGAGCAGGGGCCGCGACCACGATGGAGAACGCGCGCGTGTTCTACACGAACTTGGTCCAGCAGGTGAAGCGCGGGAGCCCCAAGAGGCCCAA TAAGGCTATCGAGACGTACTTGTTTGCTATGTTTGATGAGAACCAGAAGGATCCTGAGTTGGAGAGGAACTTTGGGGTGTTTTATCCGTACAAGCAGTCC AAGTATAACTTGAACTTTGGAGCGGCTAGAGACACTTGGGATGTTTCTTCTCAACTTTTGCACAATGCCACCACTACTGTGAGTGCCATATGA
AA sequence Show only first row Show all	>Lus10016883 pacid=23179058 polypeptide=Lus10016883 locus=Lus10016883.g ID=Lus10016883.BGIv1.0 annot-version=v1.0 MGNNLPPPSEVVSLCQQNNIWRMRLYDPNRDALWALRDSGIEVTIGVPNSDLKHLNNWDDAYWWVQEYVRNNWPNVKVKYIAVGNEVSPMYNADLASAVL PAMRNIYNALVQMGLHEQVKVSTAIDMTLLANSYPPSAGAFRDDIRWFLDPIIGFLGSVKAPLLANIYTYFSYRDNPSTISLPYALLSSQSVSVWDNGLG YTNLFDAMLDSLYSAVERLGGWSVEVVVSESGWPSAGAGAATTMENARVFYTNLVQQVKRGSPKRPNKAIETYLFAMFDENQKDPELERNFGVFYPYKQS KYNLNFGAARDTWDVSSQLLHNATTTVSAI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16260			Glycosyl hydrolase superfamily...		Lus10016883 [exp]	0	1
AT4G16260			Glycosyl hydrolase superfamily...		Lus10037749 [exp]	1.4	0.9781
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10019183 [exp]	1.7	0.9779
AT3G26270		CYP71B25	"cytochrome P450, family 71, s...		Lus10019463 [exp]	2.0	0.9816
AT1G22430			GroES-like zinc-binding dehydr...		Lus10004785 [exp]	2.2	0.9749
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10019462 [exp]	2.8	0.9763
AT5G56350			Pyruvate kinase family protein...		Lus10003439 [exp]	2.8	0.9614
AT4G12545			Bifunctional inhibitor/lipid-t...		Lus10024624 [exp]	3.0	0.9598
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10037209 [exp]	3.7	0.9742
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10024511 [exp]	4.2	0.9743
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10035629 [exp]	6.7	0.9269

Compare expression of checked genes

Lus10016883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.