Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49450 79 / 1e-19 bZIP ATBZIP1 basic leucine-zipper 1 (.1) AT3G62420 78 / 6e-19 bZIP ATBZIP53 basic region/leucine zipper motif 53 (.1) AT2G18160 69 / 2e-15 bZIP GBF5, ATBZIP2 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) AT4G34590 66 / 2e-14 bZIP ATB2, ATBZIP11, BZIP11, GBF6 Arabidopsis thaliana basic leucine-zipper 11, G-box binding factor 6 (.1) AT1G75390 65 / 8e-14 bZIP ATBZIP44 basic leucine-zipper 44 (.1.2) AT5G60830 54 / 1e-09 bZIP ATBZIP70 basic leucine-zipper 70 (.1) AT5G15830 52 / 6e-09 bZIP ATBZIP3 basic leucine-zipper 3 (.1) AT3G30530 50 / 3e-08 bZIP ATBZIP42 basic leucine-zipper 42 (.1) AT5G38800 49 / 7e-08 bZIP ATBZIP43 basic leucine-zipper 43 (.1) AT1G13600 49 / 1e-07 bZIP ATBZIP58 basic leucine-zipper 58 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037750 [exp] 258 / 5e-90 AT5G49450 85 / 1e-21 basic leucine-zipper 1 (.1) Lus10010005 [exp] 83 / 1e-20 AT3G62420 164 / 1e-52 basic region/leucine zipper motif 53 (.1) Lus10025024 [exp] 81 / 6e-20 AT3G62420 161 / 9e-52 basic region/leucine zipper motif 53 (.1) Lus10024279 [exp] 66 / 4e-14 AT1G75390 166 / 6e-53 basic leucine-zipper 44 (.1.2) Lus10001347 [exp] 65 / 1e-13 AT1G75390 159 / 4e-50 basic leucine-zipper 44 (.1.2) Lus10028333 [exp] 64 / 4e-13 AT1G75390 134 / 5e-40 basic leucine-zipper 44 (.1.2) Lus10041780 [exp] 62 / 1e-12 AT1G75390 135 / 2e-40 basic leucine-zipper 44 (.1.2) Lus10040428 [exp] 61 / 5e-12 AT1G75390 148 / 8e-46 basic leucine-zipper 44 (.1.2) Lus10029101 [exp] 57 / 2e-10 AT3G30530 148 / 5e-45 basic leucine-zipper 42 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G142900 [exp] 116 / 4e-34 AT5G49450 85 / 7e-22 basic leucine-zipper 1 (.1) Potri.008G106700 [exp] 101 / 2e-28 AT3G62420 88 / 6e-23 basic region/leucine zipper motif 53 (.1) Potri.004G158200 [exp] 84 / 3e-21 AT1G75390 152 / 8e-48 basic leucine-zipper 44 (.1.2) Potri.005G119300 [exp] 80 / 9e-20 AT2G18160 130 / 3e-39 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) Potri.014G120800 [exp] 78 / 3e-19 AT3G62420 161 / 8e-52 basic region/leucine zipper motif 53 (.1) Potri.002G031900 [exp] 75 / 9e-18 AT1G75390 128 / 3e-38 basic leucine-zipper 44 (.1.2) Potri.009G119700 [exp] 75 / 1e-17 AT4G34590 154 / 9e-49 Arabidopsis thaliana basic leucine-zipper 11, G-box binding factor 6 (.1) Potri.005G231300 [exp] 74 / 3e-17 AT1G75390 172 / 2e-55 basic leucine-zipper 44 (.1.2) Potri.002G196200 [exp] 71 / 2e-16 AT3G62420 182 / 3e-60 basic region/leucine zipper motif 53 (.1) Potri.007G019900 [exp] 71 / 3e-16 AT1G75390 130 / 5e-39 basic leucine-zipper 44 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10016884 pacid=23179105 polypeptide=Lus10016884 locus=Lus10016884.g ID=Lus10016884.BGIv1.0 annot-version=v1.0 ATGTCGGCGGCCGCGGCGATCGACGAGGAGAAGAAGAGGAAGAGAATGATATCGAACAGGGAATCGGCGAGGAGATCTCGAATGAGGAAGCAGAAGCAGA TTGAAGATCTGATTGCCGAGAAGGCGGTATTGGAGAGAAGCCTAAGTGAAGCGAATCAGAAGCTGAGTGGTCTGTGGCAGAGGTACCGCCATTTGGAGGC TGAGAACGAATCGCTGAGGGATGAGATGGCGAGACTCACGGAGTACTCGGCGAGTCTAAATCGGATGTTGGCGAGTTATAACGGGACGGAGTCCGGTATG GATGATGATGTCTCGGATGGTAAAGACGTCGAGGAGGCTGCTAGTACGGCGGCGTTTCAGAATCCATGGAGTGATTTCACGGTGCAGAGCAGTTCGGCGC AGTTGGTTACAGACTGTTTCTAG
AA sequence Show only first row Show all	>Lus10016884 pacid=23179105 polypeptide=Lus10016884 locus=Lus10016884.g ID=Lus10016884.BGIv1.0 annot-version=v1.0 MSAAAAIDEEKKRKRMISNRESARRSRMRKQKQIEDLIAEKAVLERSLSEANQKLSGLWQRYRHLEAENESLRDEMARLTEYSASLNRMLASYNGTESGM DDDVSDGKDVEEAASTAAFQNPWSDFTVQSSSAQLVTDCF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Lus10016884 [exp]	0	1
AT5G04760	MYB		Duplicated homeodomain-like su...		Lus10036413 [exp]	1.0	0.9766
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Lus10037750 [exp]	1.4	0.9715
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014688 [exp]	2.8	0.9465
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10020288 [exp]	2.8	0.9609
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10030446 [exp]	3.0	0.9457
AT5G04760	MYB		Duplicated homeodomain-like su...		Lus10041088 [exp]	3.0	0.9610
AT1G78100		AUF1	auxin up-regulated f-box prote...		Lus10041123 [exp]	3.2	0.9514
					Lus10014377 [exp]	7.7	0.8963
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030901 [exp]	8.1	0.9479
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10042934 [exp]	9.2	0.9475

Compare expression of checked genes

Lus10016884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.