Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16990 278 / 2e-95 Haem oxygenase-like, multi-helical (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037751 [exp] 438 / 1e-158 AT3G16990 276 / 1e-94 Haem oxygenase-like, multi-helical (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G106600 [exp] 313 / 2e-109 AT3G16990 296 / 1e-102 Haem oxygenase-like, multi-helical (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0230 [flax] [poplar] HO PF03070 [flax] [poplar] TENA_THI-4 TENA/THI-4/PQQC family
Representative CDS sequence Show only first row Show all	>Lus10016885 pacid=23179091 polypeptide=Lus10016885 locus=Lus10016885.g ID=Lus10016885.BGIv1.0 annot-version=v1.0 ATGGCGGAATCCGGCAGGATAATAATCGATAGTTGGATCAGGAAGCATCGGATCCTCTACACGGGAGCTACCAGACACAGTTTCACCGTCAACATACGAG ATGGCTCCATAGATCGACCCGCCTTCAAACGTTGGCTGGCGCAAGATTATGTGTTCGTGAGGTATTTCTTCACTCCGTTTGTTGCGAGTGTGCTGATCAA AGCTTCCAAGCAGTCGTCGGAGAGTAACGATGTGGAAGTGGTTCTGGCTGGCATGGCCTCTATGAGCGATGAAATCAATTGGTTCAAACAAGAGGCTTCC AAATGGGACGTTCCTCTCTCCAATCTCACTATCCACCCCGCTAACCAGAATTACTGCAGATTTCTGGAGAAGTTAACGTCACCAGAAGTGGACTATACGG TAGCTATGACAGCGTTTTGGGCAATCGAAACGGTGTACCAGGAGAGCTTTTCGTATTGTCTGGAAGATGGGAACAGGGTTCCTCCGGAGCTAAAAGATGC TTGCCAGAGATGGGGGAATCCACGTTTCGGCGAATACTGTCACGCCCTTGGGGGAATTGTTGCCCGGTGCCTTGAAAAGGCACCGGGTAATGTCGTTGCA AAGGCTGAGACCACCTTCATGGAGGTGCTGGAGCATGAGATTGAGTTCTGGAATATGAGTAATGGTAGGGTTTGA
AA sequence Show only first row Show all	>Lus10016885 pacid=23179091 polypeptide=Lus10016885 locus=Lus10016885.g ID=Lus10016885.BGIv1.0 annot-version=v1.0 MAESGRIIIDSWIRKHRILYTGATRHSFTVNIRDGSIDRPAFKRWLAQDYVFVRYFFTPFVASVLIKASKQSSESNDVEVVLAGMASMSDEINWFKQEAS KWDVPLSNLTIHPANQNYCRFLEKLTSPEVDYTVAMTAFWAIETVYQESFSYCLEDGNRVPPELKDACQRWGNPRFGEYCHALGGIVARCLEKAPGNVVA KAETTFMEVLEHEIEFWNMSNGRV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10016885 [exp]	0	1
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10030738 [exp]	1.0	0.9519
AT5G48340			unknown protein		Lus10041085 [exp]	3.2	0.9417
AT5G64816			unknown protein		Lus10009081 [exp]	3.9	0.9086
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10021515 [exp]	4.2	0.9367
AT5G13240			transcription regulators (.1)		Lus10007961 [exp]	5.7	0.9183
AT3G12300			unknown protein		Lus10005383 [exp]	6.7	0.9322
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10013263 [exp]	8.7	0.9346
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10028435 [exp]	8.8	0.9157
AT1G68000		ATPIS1	phosphatidylinositol synthase ...		Lus10014117 [exp]	9.2	0.9226
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10016956 [exp]	9.5	0.8882

Compare expression of checked genes

Lus10016885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.