Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 670 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 638 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 635 / 0 EFR EF-TU receptor (.1) AT3G47110 626 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 613 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 413 / 1e-128 Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 404 / 6e-124 Leucine-rich receptor-like protein kinase family protein (.1) AT4G08850 402 / 7e-124 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT5G48940 393 / 9e-120 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G24240 382 / 1e-115 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011387 [exp] 1234 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 1227 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 1219 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011388 [exp] 1209 / 0 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 1172 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 1104 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 1098 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 1097 / 0 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 1087 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G102700 [exp] 859 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 845 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 830 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 816 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 806 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 805 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 801 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 783 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 776 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 776 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10016896 pacid=23179123 polypeptide=Lus10016896 locus=Lus10016896.g ID=Lus10016896.BGIv1.0 annot-version=v1.0 ATGATTTCTGCTGATCCTTTGGGGGCATTGAATTCGTGGAATGATTCTACCCACTTCTGTAAGTGGTATGGTGTGTCTTGTTCTAAAAGACATCACGGCA GAGTCACTGCCTTATATCTACCATATCAAACACTCTCTGGCTCTATTTCACCACATGTTGGCAATCTCAGCTTCCTTACAAAGTTGGATCTCGCTGGCAA CAATTTCATTGGAGAAATACCTCCTGAAATCGGCCGCCTTTTCAGATTGCAAGTCTTGTCGTTTTACAAAAACTCTATTGGCGGTGAGATTCCTTCCAAT ATCTCAGGATGTTCTGCTATTACCACATTCGATGTAGGTTATAACAAGCTGGTGGGAGGAATACCATGGCAATTCAGCGTATTGAAAAAACTCCAAAAAG TTGGAGTGGCAATAAACCATCTTAACGGAAGCATCCTTTCCACTGTCGGCAATTTGTCATCTCTTCAATATTTTGATGGAGGCGATAACCAATTCAGTGG AAAAGTTGCTGATACTCTAGGCCAATTGAAATACATTCAGGTTTTGGTCCTAGGCATCAATAACTTACATGGTGAAATCCCTGCTTCCATTTTCAATCTT TCTTCTCTTATGCATATATGGCTTGGAGAAAATCAATTTTGTGGAAATCTTCCTCAGAATCTTGGAATATTACTTCCAAATCTTCAGACATTTGATGTGG ATTTTAACCACTTCACTGGTAGTATTCCACCTTCACTATCCAATGCATCTAATTTGGTTCTACTACAACTTGATGCCAACAATTTTACCGGGAGCGTGCC TAGTATGGAAGGTTGTAACAAGCTTACAAACTTTTCAATCGCTAGAAACTCTCTGGGAAGTGGGAGGGCTAATGACTTGAGCTTTCTTTCTTCTTTGACC AATACCACAAGGTTGATAGAGGTGCACATTCAGGAAAATAATTTCGGTGGTAGTTTACCACAAAATATTGGCAACTTGTCAACCAGCCTCGAGCAACTAG CCTTCAACGACAACAAAATATCAGGAAATATTCCAAACGGAATACAGTACCTTATCCATTTGAAAAGGATTTGGGGACATAACAATAATTTATCAGGTAC GATCCCAAAAAACATTGGAAACCTTAAGTCATTAGAGGAGTTGTATTTATATAACAACAAAATTGTAGGATATATTCCATCTTCGGTGGGAAATTTGACC AAGTTAAGTGAACTGCATATTGGAGCTAATCGGCTATATGGAGAAATTCCTGCTTCTATCCAGAATTGCAAACAAATGTCACTTCTCATCTTTGGTAGCA ACAATCTCAGTGGTGTTATCTCCCCACAAATCTCAAGCCTTACCTCTTTGACAATTGTCCTAGACTTGTCTTACAATCAATTCACAGGTGCCATTCCCAT TGGAGTGGGGAATCTAAATAAGTTGGGCACGTTGGATTTATCTCATAATATGTTGTCAAACAACATCCCAAGTAGTTTGGGTGGCTGTATCAGCCTACAA TATTTATACTTGGAAGTAAATCACCTACAAGGTACAATTCCTTCTTCATTAAGTTCATTGAGAGGTCTTCAGGAGTTGAATCTTTCTACCAATGATTTAT GTGGTCAAATTCCAAAATATTTGGAGATTATGAATATCTCAATTTTGGATCTATCGCATAACAATTTTGAAGGTGAGGTACCCGAACAAGGAGTCTTCAA AAATAGTAGCAGTATTTTAGTAATTGGAAATAATAAGCTTTGTGGAGGAATTGTTGCACTTAAACTTCCACCATGTAGCTTAAGGACGCACTCAAACAAG ACATTGAGTCTTAAGTGGAATATTGTTATATCAATAATTTCCAGTCTACTCTTTCTCACCTTAGTGGGTTCTTGCTTCTTCATCTTGTTGATTAAAAAGA GAAGACAACATACAGTTTCAAAGGATGATATGAAATTTCTACAACTGTCTTTTGATAAACTATTCAAAGCCACGGATGGCTTCTCCTCAACAAATCAAAT TGGAGTAGGTAGTTTTGGCACAGTGTATAAGGGTGTTGTCCTTGATGATATTAATGAAACTTATATCAATGTGGCGGTAAAAGTATTCAACCTTCAACGT CAAGGAGCTTCTAAAAGTTTTATGGCAGAATGTGAAGCGTTGAAGAACATCAAACACAAAAACCTTGTGAAGATAGTGACAGTTTGTTCAAGCATTGATC ATAAAGGAAATGATTTTAAAGCTCTAATCTATGAGTACTTGGGCAATGGAAGTTTAGAAATCTGGCTCCATCGACCCGTTGAAAGAATAAATAAGTCTAC AACACTTATTTTAAACTTCCTTCAGAGAATAAATATTTCTATTGATATAGCTTCTGCGATAGATTATCTTCACAACCATTGTGGAACTCCAATTGTTCAT TGTGATCTTAAACCTAACAATGTACTTCTTGACGAAGATATGATGGCTCATGTTGGTGATTTTGGGCTATCAAAATTCCTTTGGACAATTGCGAAGCCCT CTTCAAGTTCCATTGGTATAAAAGGTACTATCGGCTATGCACCTCCAGAATACGGAATGGGAAATGAAGTTTCAATACAAGGCGACGTTTATAGTTATGG TATCCTTTTACTTGAATTATTCACTGGAAAGAGACCAACCGACGATACTTTTAGAGACGGCTTAACCCTTCATAACATCGTCAAAAGCGCTTTGTCAAAA CTACATTCATCTGAAGTTTTGGATTCGATTCTACTCAACGAACTACTTCATAGGTTGGAAACTCAACATAACTACAGCGCTAGCAGGTTCAAAGAAGTCA GAAAGGACCTAGAAGAACTAATGAGTTCCATTCTCGAAATTGGGTTATATGTTCTTCGGAGATCCCAGAAAAGAGACTTAACATGA
AA sequence Show only first row Show all	>Lus10016896 pacid=23179123 polypeptide=Lus10016896 locus=Lus10016896.g ID=Lus10016896.BGIv1.0 annot-version=v1.0 MISADPLGALNSWNDSTHFCKWYGVSCSKRHHGRVTALYLPYQTLSGSISPHVGNLSFLTKLDLAGNNFIGEIPPEIGRLFRLQVLSFYKNSIGGEIPSN ISGCSAITTFDVGYNKLVGGIPWQFSVLKKLQKVGVAINHLNGSILSTVGNLSSLQYFDGGDNQFSGKVADTLGQLKYIQVLVLGINNLHGEIPASIFNL SSLMHIWLGENQFCGNLPQNLGILLPNLQTFDVDFNHFTGSIPPSLSNASNLVLLQLDANNFTGSVPSMEGCNKLTNFSIARNSLGSGRANDLSFLSSLT NTTRLIEVHIQENNFGGSLPQNIGNLSTSLEQLAFNDNKISGNIPNGIQYLIHLKRIWGHNNNLSGTIPKNIGNLKSLEELYLYNNKIVGYIPSSVGNLT KLSELHIGANRLYGEIPASIQNCKQMSLLIFGSNNLSGVISPQISSLTSLTIVLDLSYNQFTGAIPIGVGNLNKLGTLDLSHNMLSNNIPSSLGGCISLQ YLYLEVNHLQGTIPSSLSSLRGLQELNLSTNDLCGQIPKYLEIMNISILDLSHNNFEGEVPEQGVFKNSSSILVIGNNKLCGGIVALKLPPCSLRTHSNK TLSLKWNIVISIISSLLFLTLVGSCFFILLIKKRRQHTVSKDDMKFLQLSFDKLFKATDGFSSTNQIGVGSFGTVYKGVVLDDINETYINVAVKVFNLQR QGASKSFMAECEALKNIKHKNLVKIVTVCSSIDHKGNDFKALIYEYLGNGSLEIWLHRPVERINKSTTLILNFLQRINISIDIASAIDYLHNHCGTPIVH CDLKPNNVLLDEDMMAHVGDFGLSKFLWTIAKPSSSSIGIKGTIGYAPPEYGMGNEVSIQGDVYSYGILLLELFTGKRPTDDTFRDGLTLHNIVKSALSK LHSSEVLDSILLNELLHRLETQHNYSASRFKEVRKDLEELMSSILEIGLYVLRRSQKRDLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10016896 [exp]	0	1
					Lus10021407 [exp]	2.6	0.9627
AT3G47570			Leucine-rich repeat protein ki...		Lus10030847 [exp]	3.6	0.9090
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Lus10004504 [exp]	3.9	0.9572
					Lus10021406 [exp]	4.2	0.9600
AT3G47570			Leucine-rich repeat protein ki...		Lus10004388 [exp]	5.2	0.9392
AT5G05340			Peroxidase superfamily protein...		Lus10032786 [exp]	5.7	0.9569
AT3G60290			2-oxoglutarate (2OG) and Fe(II...		Lus10018950 [exp]	6.7	0.9533
AT5G22860			Serine carboxypeptidase S28 fa...		Lus10005354 [exp]	7.0	0.9482
AT2G47190	MYB	AtMYB2	myb domain protein 2 (.1)		Lus10009996 [exp]	7.7	0.9515
					Lus10005902 [exp]	8.0	0.8200

Compare expression of checked genes

Lus10016896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.