Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17000 386 / 2e-135 UBC32 ubiquitin-conjugating enzyme 32 (.1) AT5G50430 125 / 2e-34 UBC33 ubiquitin-conjugating enzyme 33 (.1.2.3) AT1G17280 120 / 1e-32 UBC34 ubiquitin-conjugating enzyme 34 (.1.2) AT4G27960 81 / 1e-18 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT1G64230 81 / 1e-18 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT3G08690 80 / 3e-18 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT5G41700 79 / 5e-18 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT5G53300 79 / 8e-18 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT2G16740 77 / 3e-17 UBC29 ubiquitin-conjugating enzyme 29 (.1) AT5G56150 76 / 9e-17 UBC30 ubiquitin-conjugating enzyme 30 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037759 [exp] 569 / 0 AT3G17000 397 / 1e-139 ubiquitin-conjugating enzyme 32 (.1) Lus10003932 [exp] 129 / 9e-36 AT5G50430 368 / 2e-130 ubiquitin-conjugating enzyme 33 (.1.2.3) Lus10037459 [exp] 129 / 4e-34 AT5G50430 374 / 2e-129 ubiquitin-conjugating enzyme 33 (.1.2.3) Lus10014187 [exp] 81 / 1e-18 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10021385 [exp] 81 / 1e-18 AT1G64230 302 / 1e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10022726 [exp] 81 / 1e-18 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10039323 [exp] 81 / 3e-18 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10014942 [exp] 81 / 3e-18 AT1G64230 301 / 3e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10038827 [exp] 81 / 3e-18 AT1G64230 301 / 3e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143900 [exp] 447 / 1e-159 AT3G17000 386 / 1e-135 ubiquitin-conjugating enzyme 32 (.1) Potri.008G106300 [exp] 446 / 4e-159 AT3G17000 380 / 7e-133 ubiquitin-conjugating enzyme 32 (.1) Potri.001G162200 [exp] 127 / 3e-35 AT1G17280 371 / 9e-132 ubiquitin-conjugating enzyme 34 (.1.2) Potri.016G138900 [exp] 82 / 6e-19 AT1G64230 304 / 3e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.006G110200 [exp] 81 / 1e-18 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.003G136200 [exp] 81 / 1e-18 AT1G64230 304 / 4e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.019G131400 [exp] 81 / 1e-18 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.004G175000 [exp] 80 / 3e-18 AT5G53300 292 / 2e-103 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Potri.001G094900 [exp] 80 / 3e-18 AT1G64230 302 / 2e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.012G033000 [exp] 80 / 3e-18 AT5G53300 302 / 1e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10016898 pacid=23179059 polypeptide=Lus10016898 locus=Lus10016898.g ID=Lus10016898.BGIv1.0 annot-version=v1.0 ATGGCGGAGGACAAGTACAATCTCAAGAACCCCGCGGTGAAGAGGATCCTGCAGGAGGTCAAAGAGATGCAATCGAATCCCTCCGATGATTTCATGAGCC TCCCTCTCGAGGAGAATATATTTGAGTGGCAATTCGCCATCAGGGGTCCTGGTGACACCGAGTTTGAAGGTGGGATTTATCATGGAAGGATTCAGTTACC TGCCGAGTATCCGTTTAAGCCTCCTTCATTTATGCTCTTGACGCCAAATGGCCGCTTTGAGACGCAAACCAAGGTATGCTTAAGCATTTCAAATCACCAT CCTGAGCACTGGCAACCTTCGTGGAGCGTGAGGACAGCACTTGTAGCACTCATTGCATTTATGCCAACCAATCCAAACGGTGCATTGGGATCACTAGACT ACAAGAAGGAAGAGAGGCGTGTTCTAGCTATAAAATCTCGTGAAGCAGCACCAAGATTCGGGACCCCTGAGCGTCAGAGTGTGATTGACGAGATTCATGA ATACATGCTGAGCAAAGCACCACCGGTTCCCCAATCCGACCTCTCAGGGGATTCAGAGGAACATCCAACCAAGGATGAAGGAAGCCAAGAGTCTCAAGAT GCTGGTGCTATAGAGACCGTGACCGAAACAGCTCCTACTGAAACCCAGACCGCAGTGGAAAGGGTCGAAATCGAAAATGTGCCGGAGGCTTCTCCTACTC GAGCTGGAATCAGAGCATCTCCGGAGGTGGTTCCAGCTAGAGGCTCGATTGATCATCAAGTGCATCGAAGATCATCGGCTGATACGAGGGTCCAAAGGCC TGCTGCTGCTGATGATAGGCTCTTCACATTGGCTGCTGTAGGACTGACTATCGCCATTGTCGTTCTGTTGCTGAAGAAGTTCTTGAAAGCTAGTGGACAC AGTCCGGTTTTCATGGACGGGTCCTAG
AA sequence Show only first row Show all	>Lus10016898 pacid=23179059 polypeptide=Lus10016898 locus=Lus10016898.g ID=Lus10016898.BGIv1.0 annot-version=v1.0 MAEDKYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTPNGRFETQTKVCLSISNHH PEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRVLAIKSREAAPRFGTPERQSVIDEIHEYMLSKAPPVPQSDLSGDSEEHPTKDEGSQESQD AGAIETVTETAPTETQTAVERVEIENVPEASPTRAGIRASPEVVPARGSIDHQVHRRSSADTRVQRPAAADDRLFTLAAVGLTIAIVVLLLKKFLKASGH SPVFMDGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Lus10016898 [exp]	0	1
AT1G16180			Serinc-domain containing serin...		Lus10026111 [exp]	1.0	0.9434
AT1G22730			MA3 domain-containing protein ...		Lus10011324 [exp]	1.4	0.9232
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10043277 [exp]	1.7	0.9216
AT1G22040			Galactose oxidase/kelch repeat...		Lus10020960 [exp]	3.5	0.9101
AT2G28370			Uncharacterised protein family...		Lus10037399 [exp]	5.8	0.8722
AT3G61180			RING/U-box superfamily protein...		Lus10029582 [exp]	5.9	0.8968
AT4G25672		CPuORF12	conserved peptide upstream ope...		Lus10027512 [exp]	5.9	0.8832
AT5G06370			NC domain-containing protein-r...		Lus10029402 [exp]	6.9	0.8625
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10038744 [exp]	6.9	0.8827
AT4G03000			RING/U-box superfamily protein...		Lus10041245 [exp]	7.3	0.8714

Compare expression of checked genes

Lus10016898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.