Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06660 186 / 7e-54 PAPA-1-like family protein / zinc finger (HIT type) family protein (.1) AT1G56460 183 / 3e-52 HIT zinc finger ;PAPA-1-like conserved region (.1.2) AT2G47350 166 / 8e-46 HIT zinc finger ;PAPA-1-like conserved region (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037760 [exp] 665 / 0 AT1G56460 209 / 9e-63 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Lus10010914 [exp] 179 / 2e-50 AT1G56460 356 / 3e-117 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Lus10031419 [exp] 178 / 4e-50 AT1G56460 349 / 9e-115 HIT zinc finger ;PAPA-1-like conserved region (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G106200 [exp] 249 / 3e-78 AT3G06660 204 / 4e-61 PAPA-1-like family protein / zinc finger (HIT type) family protein (.1) Potri.005G014000 [exp] 200 / 4e-58 AT1G56460 250 / 1e-76 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Potri.002G195132 [exp] 190 / 8e-57 AT1G56460 236 / 5e-74 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Potri.013G008300 [exp] 196 / 2e-56 AT2G47350 268 / 3e-83 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Potri.014G119600 [exp] 189 / 6e-54 AT2G47350 272 / 1e-84 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Potri.010G144000 [exp] 55 / 8e-09 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04795 [flax] [poplar] PAPA-1 PAPA-1-like conserved region CL0175 [flax] [poplar] TRASH PF04438 [flax] [poplar] zf-HIT HIT zinc finger
Representative CDS sequence Show only first row Show all	>Lus10016899 pacid=23179106 polypeptide=Lus10016899 locus=Lus10016899.g ID=Lus10016899.BGIv1.0 annot-version=v1.0 ATGGGCAGTCCTCCTGGGAATGGGATTGCTATTGCGGACCTTGGAAGCTTCATAGCAAGGAAGAAGAGGAGTTGTGCAACTCGTTGGCCGAAGAGAGGGT TTGGTGCTTACGGATTCAATCCACCGTCCACTTCTGCTGCTCTATCTCTAGGCAGTGGGAATGGCCAGGAGGACTCACATTTAGGGAAACCTACTGCTGA TGGCTTGGGTGGCGGTGAGAAACGTTTGAAGAAGCTGAAACTGAAGGTTGGTGGTGTTACTCATACTATACACACCAAGTCTGCTGCTGAATATGGCACT GGTGCTGGTGGTGGTGGTGAGCCTTATGCCTCTAACTATCCTGGGAAGCAGCCTTTTCCGGATTCTAATTTTGGTAAGGAGAAGCCGTCAAGTGGAAAGA TATCCAATGAAAATGTGTACGTAAACGAGCATGAAGCAACTCGTAAAAGTAAACGTGTTCCAAAGCGACGTAAGCTAGATCTTGGACTGGAGGAAGACGA TGATAATGTGGATGAGGAGATACGTTATCTTGGAAGAATCAATGCTACTACCAGGGTATCTGCAAATGGTGACGATTACAAAGCTGGAACAGGAGTGATG CCATTGGAAGTTTCAGACATTGGGAGAGGGGGTTTGGAAGAGTGTGTTCTAGGAGAAAATGACCAATCTCTTTTGGATAAAACTATCAGTAGTCATAAAA GGTCTAGAATTCGTCACGAAGATGATGAATACATGGAAGAAGAAGTTGAGTCTGATGAAATCAAGAAGTCGCATTTTGGTGAAGGAGATACTGACAGAGA TCATGTTACCATGGATAGTGCTGTTTCACTTGTCAAAGATGTTTCGCTTAGATCCGGTTCCAGTCTTGTTGAGTTTCCAGATGGTTTGCCTGATGCTCTT TCTAAAAAAAAGGGCAAAGTCTCTAACGTGGACCAACAGTTGAAGAAAGCCGAGGCTGCACAGAGGCGCAAGATGCAGGCAGAGAAGCTTGCTAAGGAGG CTGAGGCTGAGGCTATCAGAAGGATTTTGGGTCAAGATTCTAGTAGAAAGAAGAAGGAAGAAAAGATGAAGAAACAAAGAGATGATGTAGCTCAGGAAAA GGCTATCAAAGGAAACGCAATCGCGGCAAATACAGTTAGATGGGTGATTGGTCCTGCAGGCACTACCGTCACTTTCTCAGACGATCTCGGTTTGCCTCGG ATATTTGATTCAACCCCGCGCAGCTATCCTCCACCAAGGGAGAAATGTGCAGGTCCGAACTGCACGAATGCATACAAATACCGGGATTCCAAGCTGAAGC TTCCTTTGTGCAGTCTTCAGTGTTACAAGGCAATTCAAGGAAAGGCGGTGGTGCATTGCTGA
AA sequence Show only first row Show all	>Lus10016899 pacid=23179106 polypeptide=Lus10016899 locus=Lus10016899.g ID=Lus10016899.BGIv1.0 annot-version=v1.0 MGSPPGNGIAIADLGSFIARKKRSCATRWPKRGFGAYGFNPPSTSAALSLGSGNGQEDSHLGKPTADGLGGGEKRLKKLKLKVGGVTHTIHTKSAAEYGT GAGGGGEPYASNYPGKQPFPDSNFGKEKPSSGKISNENVYVNEHEATRKSKRVPKRRKLDLGLEEDDDNVDEEIRYLGRINATTRVSANGDDYKAGTGVM PLEVSDIGRGGLEECVLGENDQSLLDKTISSHKRSRIRHEDDEYMEEEVESDEIKKSHFGEGDTDRDHVTMDSAVSLVKDVSLRSGSSLVEFPDGLPDAL SKKKGKVSNVDQQLKKAEAAQRRKMQAEKLAKEAEAEAIRRILGQDSSRKKKEEKMKKQRDDVAQEKAIKGNAIAANTVRWVIGPAGTTVTFSDDLGLPR IFDSTPRSYPPPREKCAGPNCTNAYKYRDSKLKLPLCSLQCYKAIQGKAVVHC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06660			PAPA-1-like family protein / z...		Lus10016899 [exp]	0	1
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10018895 [exp]	3.0	0.8884
AT5G46190			RNA-binding KH domain-containi...		Lus10023300 [exp]	4.2	0.8764
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10028590 [exp]	4.2	0.8591
AT2G45620			Nucleotidyltransferase family ...		Lus10015854 [exp]	4.5	0.8640
AT5G54280		ATMYOS1, ATM4, ...	ARABIDOPSIS THALIANA MYOSIN 1,...		Lus10037876 [exp]	7.3	0.8642
AT3G23900			RNA recognition motif (RRM)-co...		Lus10043159 [exp]	7.4	0.8622
AT1G68550	AP2_ERF	CRF10	cytokinin response factor 10, ...		Lus10034316 [exp]	7.9	0.8501
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Lus10004278 [exp]	9.5	0.8251
AT4G22760			Tetratricopeptide repeat (TPR)...		Lus10028907 [exp]	10.1	0.7611
AT5G17930			MIF4G domain-containing protei...		Lus10014048 [exp]	11.7	0.8465

Compare expression of checked genes

Lus10016899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.