Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17020 228 / 2e-72 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT3G53990 168 / 2e-49 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT3G03270 160 / 1e-46 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT3G50140 110 / 2e-25 Plant protein of unknown function (DUF247) (.1) AT3G44700 105 / 1e-24 Plant protein of unknown function (.1) AT3G50190 107 / 2e-24 Plant protein of unknown function (DUF247) (.1) AT3G50170 103 / 2e-23 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50160 100 / 3e-22 Plant protein of unknown function (DUF247) (.1) AT3G50120 100 / 4e-22 Plant protein of unknown function (DUF247) (.1) AT3G50130 100 / 6e-22 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037762 [exp] 353 / 1e-116 AT3G50140 249 / 6e-77 Plant protein of unknown function (DUF247) (.1) Lus10037761 [exp] 332 / 1e-112 AT3G17020 224 / 4e-76 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10022602 [exp] 172 / 6e-51 AT3G53990 225 / 2e-76 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10021104 [exp] 167 / 4e-49 AT3G53990 215 / 2e-72 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10017207 [exp] 167 / 5e-49 AT3G53990 217 / 2e-73 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10039777 [exp] 120 / 3e-29 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 117 / 3e-28 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10021501 [exp] 103 / 5e-26 AT3G53990 144 / 3e-45 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10009871 [exp] 108 / 6e-25 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G144100 [exp] 248 / 7e-80 AT3G17020 234 / 3e-80 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.010G144200 [exp] 211 / 2e-62 AT3G50140 245 / 7e-76 Plant protein of unknown function (DUF247) (.1) Potri.016G104600 [exp] 171 / 1e-50 AT3G53990 229 / 6e-78 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.006G092700 [exp] 167 / 4e-49 AT3G53990 207 / 1e-69 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.017G144301 [exp] 164 / 5e-48 AT3G03270 248 / 9e-86 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.004G075375 [exp] 162 / 2e-47 AT3G03270 243 / 9e-84 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.013G146300 [exp] 106 / 2e-24 AT4G31980 217 / 1e-63 unknown protein Potri.007G047700 [exp] 103 / 3e-23 AT3G50120 721 / 0.0 Plant protein of unknown function (DUF247) (.1) Potri.013G146700 [exp] 102 / 5e-23 AT3G50150 233 / 2e-71 Plant protein of unknown function (DUF247) (.1) Potri.005G116100 [exp] 102 / 7e-23 AT2G36430 511 / 4e-180 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10016900 pacid=23179092 polypeptide=Lus10016900 locus=Lus10016900.g ID=Lus10016900.BGIv1.0 annot-version=v1.0 ATGACCGGCCACCACCACCACCCGCCAAATCCGGAGCGGCGGAAGGAGGATGTGGCAATCGAAATCCAACCCTCCGACGACAACAACCTCGTCTCCTCCA TCCTAGGACAGATGGAAACGGTCTCCTCACTCCACTCAATCTGCCGCGTGAACCCCACGCTCCGCTCGTCGAGCAAGAGATCCTACGTCCCGGACAAGGT CTCGATCGGCCCTTACCACCACGGCGCCGCAGCAGACGAGTCGCTGAAGACAATGGAAGACCACAAGTGGCGGTACGTGCACGCGCTCCTGAACCGGAAG CCGGAGATGGAAGCCAGCCTGGACGGCTGCGTTTCGGCGCTGAAGGAGCTGGAACAGAGGTGCCGAACCTGCTACGCAGACGACGTCGGATTGTCTAGCC ATGAATTCGTGAAGGTGATGTTCCTGGACGGGTGCTTCATCATCGAGCTGTTTCTGAAGTACTCCAACAAGACGCTACGTCGTCGTAACGATCCGATTTT CAGCGTCCCTGGGATGCTTTTCGATCTGAGCTCAGGAATCAGGATCAAGAAGGCCAAAACCAACAACTTACTCGACATCAAATTCGCAAACGGCGTCCTA CAGATCCCACCGATCCAAGTCCACCAATACACGGAGTCCCTGTTCCGGAACCTCATCACCCTCGAACGTTGCTCCAACGTCCACCAGGGCAACGTGCACC ACGTCACATCGTACGTGGTGCTTATGGGGAGCTTGATCGGGAGCGAAAGGGACGTCAAATTTCTGAGGCAGAGAGAGATTCTGACGAGTTATGATGGTGA TCAGAAAGTTGTGGAAGTGGGGAAGTTGTTTGAGAAGCTGTGTGAGGAAGTTGAGTTGAAGGAGTCGTATTATGATGGGATTTGTGAGGTGGTGAATGGG TATAGGGTGAAGAATATAAGGGCGTTGAAGAAGAAGTTGGAGCAGCGGCGTAGGAATAACAGTCGACGTCGTCGGCCGACGGTGAAGTGGGTTTTGCTGG CTGCGGTTTTGGTGCTTTTGATTGCTTTGGTTGGGATTCTGTTATCTGTCCTCACTTTTGTTCATCACAAGAAACACATAATCAGAGCAACACAGAGAAC TCTGCAGATCAGGCCACTAGAGCGCCAGAGAGAGTTCGGAAAAATCCATTCATTCATAGTTCCGGAAGAAAAAAAAAAGGCGATGGGGGACAGGAGAATC GGAGTGGCAGTGGATTTCTCGCCATGCAGCGTTAAGGCGATAAGATGGGCCATCGACAACCTTGTCCGCGACGGAGATCACCTCATCCTCCTCCACACCC GCCCCTCCGGCAAGTACGAATCCGGCGGCGAGATGCAGCTCTGGGAAACCACCGGCTCCCCGTTAATCCCTCTGGTGGAGGTCTCTCATCCGGAGACGAT GAGCAAGTACGGAGTGAAGCCCGATCCGGAGACTCTCGATGTCCTCAACACGGCTTCAAATCAAAAGAAGATTACAGTGGTGATGAAGATCTACTGGGGA GACCCTCGTGAAAAGATATGCGAAGCGATCGAGCTGATCCCTCTCACTTCCCTTGTCATTGGGAATAGAGGGTTCGGTAAGCTGAAGAGGGTGATAATGG GGAGTGTGAGCAACTACGTGGTGGATAATGGAAGTTGTCCGATCACTGTTGTCAAGGGCCCAGAACATGATGCTTGA
AA sequence Show only first row Show all	>Lus10016900 pacid=23179092 polypeptide=Lus10016900 locus=Lus10016900.g ID=Lus10016900.BGIv1.0 annot-version=v1.0 MTGHHHHPPNPERRKEDVAIEIQPSDDNNLVSSILGQMETVSSLHSICRVNPTLRSSSKRSYVPDKVSIGPYHHGAAADESLKTMEDHKWRYVHALLNRK PEMEASLDGCVSALKELEQRCRTCYADDVGLSSHEFVKVMFLDGCFIIELFLKYSNKTLRRRNDPIFSVPGMLFDLSSGIRIKKAKTNNLLDIKFANGVL QIPPIQVHQYTESLFRNLITLERCSNVHQGNVHHVTSYVVLMGSLIGSERDVKFLRQREILTSYDGDQKVVEVGKLFEKLCEEVELKESYYDGICEVVNG YRVKNIRALKKKLEQRRRNNSRRRRPTVKWVLLAAVLVLLIALVGILLSVLTFVHHKKHIIRATQRTLQIRPLERQREFGKIHSFIVPEEKKKAMGDRRI GVAVDFSPCSVKAIRWAIDNLVRDGDHLILLHTRPSGKYESGGEMQLWETTGSPLIPLVEVSHPETMSKYGVKPDPETLDVLNTASNQKKITVVMKIYWG DPREKICEAIELIPLTSLVIGNRGFGKLKRVIMGSVSNYVVDNGSCPITVVKGPEHDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17020			Adenine nucleotide alpha hydro...		Lus10016900 [exp]	0	1
AT5G49940		ATCNFU2, NFU2	CHLOROPLAST-LOCALIZED NIFU-LIK...		Lus10015481 [exp]	1.4	0.8852
AT5G54855			Pollen Ole e 1 allergen and ex...		Lus10001821 [exp]	3.2	0.8592
AT1G05385		Psb27-H1, LPA19	LOW PSII ACCUMULATION 19, phot...		Lus10006111 [exp]	3.2	0.8384
AT5G46720			AIG2-like (avirulence induced ...		Lus10034712 [exp]	3.9	0.8540
AT2G36410			Family of unknown function (DU...		Lus10014379 [exp]	4.6	0.8292
AT1G64850			Calcium-binding EF hand family...		Lus10010653 [exp]	6.5	0.8293
AT5G58560		FOLK	farnesol kinase, Phosphatidate...		Lus10031858 [exp]	10.5	0.8221
AT4G37440			unknown protein		Lus10014864 [exp]	14.4	0.8169
AT3G10300			Calcium-binding EF-hand family...		Lus10018041 [exp]	17.0	0.8028
AT4G31870		ATGPX7	glutathione peroxidase 7 (.1)		Lus10003421 [exp]	17.5	0.8256

Compare expression of checked genes

Lus10016900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.