Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G66658 968 / 0 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT3G48170 195 / 3e-55 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT1G74920 194 / 5e-55 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT1G79440 182 / 3e-50 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT1G23800 169 / 1e-45 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT3G48000 165 / 4e-44 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT3G24503 161 / 5e-43 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT2G24270 145 / 1e-37 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4) AT1G44170 143 / 8e-37 ALDH4, ALDH3H1 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) AT4G36250 140 / 6e-36 ALDH3F1 aldehyde dehydrogenase 3F1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037763 [exp] 1113 / 0 AT3G66658 1008 / 0.0 aldehyde dehydrogenase 22A1 (.1.2) Lus10034115 [exp] 195 / 1e-54 AT3G48170 825 / 0.0 aldehyde dehydrogenase 10A9 (.1) Lus10042149 [exp] 181 / 3e-50 AT1G74920 850 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10023625 [exp] 180 / 6e-50 AT3G24503 749 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10043470 [exp] 172 / 2e-47 AT1G74920 818 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10024259 [exp] 173 / 3e-47 AT3G24503 745 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10029166 [exp] 171 / 2e-46 AT1G23800 886 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10012999 [exp] 168 / 3e-45 AT1G23800 889 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10042148 [exp] 159 / 1e-42 AT1G74920 763 / 0.0 aldehyde dehydrogenase 10A8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G106000 [exp] 982 / 0 AT3G66658 1049 / 0.0 aldehyde dehydrogenase 22A1 (.1.2) Potri.012G075600 [exp] 197 / 5e-56 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.015G070600 [exp] 184 / 2e-51 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.010G174000 [exp] 184 / 5e-51 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.002G189900 [exp] 174 / 2e-47 AT1G23800 899 / 0.0 aldehyde dehydrogenase 2B7 (.1) Potri.018G075000 [exp] 168 / 1e-45 AT3G24503 751 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Potri.012G078700 [exp] 165 / 3e-44 AT3G48000 872 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.015G074100 [exp] 164 / 8e-44 AT3G48000 885 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.005G069800 [exp] 155 / 1e-40 AT4G34240 626 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.001G412900 [exp] 152 / 1e-39 AT4G34240 678 / 0.0 aldehyde dehydrogenase 3I1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10016901 pacid=23179078 polypeptide=Lus10016901 locus=Lus10016901.g ID=Lus10016901.BGIv1.0 annot-version=v1.0 ATGGCGTTCTGGTGGCCGTTGATTGTTCTAGCTCTAGCTTATGGCCTTTGTCGCTTCCTTTTTATGCTCACCCCGGCAAATGTGCCTTCCATCGACGTTG ACGTCTCCGACGTTTCCGAAGGGAATCAAGCTCAAGAGAACGACTTCATTTACATACCTCCGAGAGGAAGAACGCAGCAATCGGAGAAAAAAGTTCAGTG CTATGAACCTGCTACCATGAAGTATTTGGGATACTTCCCTGCCTTATCGCCTTCTGAGGTCAAAGAACGTGTTGTTCTGGCAAAGAAGGCTCAGACAGTA TGGGCAAAAAGCAGCTTCAAGCAACGACGTCAGTTTCTGAGAATACTTTTGAAATACATTCTTGAGCATCAACAGCTTATATGCGAAATTTCTTCCCGTG ATACTGGAAAGACAATGGTTGATGCATCTTTGGGAGAAATAATGACTACTTGTGAGAAGATTACTTGGCTTATTGCCGAGGGTGAGCGGTGGCTAAAGCC TGAATACAGATCAACTGGGAGATCAATGATTCACAAGAAAGCTAAGGTTGAGTTTCACCCCCTTGGTATTATTGGTGCCATTGTTTCGTGGAACTACCCC TTCCATAATGTCTTTAATCCAATGCTGGCAGCAGTGTTTTCAGGGAATGGCATTGTAATCAAGGTCTCAGAACATGCAAGCTGGTCAGGATGTTTCTACT TCAGGATAATCCAAGCAGCTCTTGCTGCTGTTGGTGCTCCTGAAAATCTGGTTGACGTAATAACAGGGTTTGCTGAAACAGGAGAAGCATTGGTGTCTTC AGTTGATAAAGTCATCTTTGTTGGATCTCCTGGAGTTGGTAAGACGATAATGAGAAATGCTTCCACAAATCTTGTCCCAGTTACACTTGAGCTCGGGGGA AAAGATGCATTTATTGTGTGTGATGATGTTGATGTGCCTCAGGTCGCACAAGTAGCCGTTAGGGCTGCACTTCAATCGAGTGGACAGAACTGTGCTGGGG CCGAAAGATTTTACGTTCACAAGGACGTTTATCCTTCATTTCTCAGCCAAGTTTCTAAGATCATAAAATCAGTCTCAGCTGGGCCACCGCTTGCTGGACG GTATGATATGGGAGCACTATGCATGCAAGAGCATGCCGAGAAGCTTCAAAACCTTGTAAATGACGCTCTGGAAAAGGGAGCAGAAATTGTCGCTCGAGGA AGTTTCGGTCATCTTGGCGAAGGTGCAGTCGATCAGTTTTTCCCCCCAACAGTGATTGTGAATGTCAATCACACCATGAAATTGATGCGAGAAGAGGCTT TTGGACCCATCATTCCGATCATGCAGTTCAGCACCGACGAAGAGGCGATCAAGCTTGCAAACGACTCGAGATACGGGCTTGGCTGTGCTGTGTTTTCAGG CAGTCAACGCCGTGCAAAGGCGATAGCTTCACAGATACACTGTGGCGTTGCTGCATCCTTGCCATTCGGAGGCGTCAAAGACAGTGGATTCGGACGATTC GCTGGTATCGAAGGATTGCGAGCCTGCTGTTTAGTTAAATCGGTAGTTGAGGATAGATGGTGGCCTTACATCAAAACCAAGATACCCAAGCCCATTCAGT ACCCTGTTTCGGAGAATGGCTTCGAGTTCCAGGAATATCTTGTGGAAGCACTCTATGGGCTGAACATATGGGATCGCTTGCGAGCATTGGTCAACGTTCT GAAGTTCTTATCAGAGCAAAATTCTAGTAGTAGCGTCGGGAAAAGAAGCGAGTGA
AA sequence Show only first row Show all	>Lus10016901 pacid=23179078 polypeptide=Lus10016901 locus=Lus10016901.g ID=Lus10016901.BGIv1.0 annot-version=v1.0 MAFWWPLIVLALAYGLCRFLFMLTPANVPSIDVDVSDVSEGNQAQENDFIYIPPRGRTQQSEKKVQCYEPATMKYLGYFPALSPSEVKERVVLAKKAQTV WAKSSFKQRRQFLRILLKYILEHQQLICEISSRDTGKTMVDASLGEIMTTCEKITWLIAEGERWLKPEYRSTGRSMIHKKAKVEFHPLGIIGAIVSWNYP FHNVFNPMLAAVFSGNGIVIKVSEHASWSGCFYFRIIQAALAAVGAPENLVDVITGFAETGEALVSSVDKVIFVGSPGVGKTIMRNASTNLVPVTLELGG KDAFIVCDDVDVPQVAQVAVRAALQSSGQNCAGAERFYVHKDVYPSFLSQVSKIIKSVSAGPPLAGRYDMGALCMQEHAEKLQNLVNDALEKGAEIVARG SFGHLGEGAVDQFFPPTVIVNVNHTMKLMREEAFGPIIPIMQFSTDEEAIKLANDSRYGLGCAVFSGSQRRAKAIASQIHCGVAASLPFGGVKDSGFGRF AGIEGLRACCLVKSVVEDRWWPYIKTKIPKPIQYPVSENGFEFQEYLVEALYGLNIWDRLRALVNVLKFLSEQNSSSSVGKRSE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G66658		ALDH22A1	aldehyde dehydrogenase 22A1 (....		Lus10016901 [exp]	0	1
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Lus10022043 [exp]	5.0	0.9155
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Lus10042031 [exp]	7.1	0.9259
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10042305 [exp]	8.0	0.9220
AT1G73720		SMU1	SUPPRESSORS OF MEC-8 AND UNC-5...		Lus10023381 [exp]	10.0	0.9007
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10010670 [exp]	13.6	0.9172
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Lus10000982 [exp]	13.6	0.9216
AT1G71850			Ubiquitin carboxyl-terminal hy...		Lus10017896 [exp]	15.7	0.9054
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10036453 [exp]	15.7	0.8628
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10033203 [exp]	16.7	0.9091
AT5G01660			unknown protein		Lus10012220 [exp]	19.1	0.9051

Compare expression of checked genes

Lus10016901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.