Plant FIBer expression Database

Lus10016902 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G17030 655 / 0 Nucleic acid-binding proteins superfamily (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037764
[exp]
707 / 0 AT3G17030 671 / 0.0 Nucleic acid-binding proteins superfamily (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G144400
[exp]
818 / 0 AT3G17030 765 / 0.0 Nucleic acid-binding proteins superfamily (.1)
Potri.008G105850
[exp]
79 / 2e-17 AT3G17030 62 / 1e-12 Nucleic acid-binding proteins superfamily (.1)
PFAM info
Representative CDS sequence
>Lus10016902 pacid=23179080 polypeptide=Lus10016902 locus=Lus10016902.g ID=Lus10016902.BGIv1.0 annot-version=v1.0
ATGAGTTCATTTGCCAAACAGCGAGAGGTTGATTGCCTGAATGGAGTGTGCTCCATGGGTGTGGATTACAAAGAAGCAGACGATGAAGAAGATCCGTTCC
TTGCTTTCATTGATTACGCGATCTCTGTACTGTCACCGGAGGAGGAAGGCGGCGGAGGCGAAGATTCCAATACAGCGGAAGATGGAGCTCAGACGAGCGG
ACCTAGTTGGAACTGGATCGCAGCGCGGATCATGAAGACTTGTGTTGCTTATTCCAGTGGTGTTACTGCTGGTATTCTATTATCAGAGCTCTCTCAGGCT
TGGACTGAGCAACATAGATTTCGAGCACCAAAGAAACGACCGGAAATCATCAATCAATTGAAGATGAAACACAAGAGAAGTAAGCTGCCAAATACTGTCA
CGATCGATTCAATATACGAGAAGAATTTCCTCACGCGAACTAACGTTCTGGAAGCTGTTATTGTAGATATCTTCCTTCTCCCTGGTACACAAATCTACAT
GCTGACCTTGGGAGATTTTTGGAGCTCCAATACCATTGACCTATTTATGCATAGACGATACTATGATTTGGTACACCCTCAGAGTGCGATCTTGAAGAAA
GGGAGGGAGGTTTTTCTGACAGGATGCTATCTTCGGACAGCGAGAGAAGGATGTGGTTCTCCAAGACTGCTCCCAACTGAATACCTGGTCATTATATTAG
ATGATGACCGTGACGATGATGCAATGCTAATAGCAGCTCAGTTTTGTTCGGATACTTTCTCCTCTGTTTCTCTCAAACAGGCTAAAGATGGCGTTGCTTA
TTCTCTATATGGAAGGATTGAATCTATCGGCCCATTGGAAGCAAAAGGGTCTGTTGGTAATGAAAGGAAGCAAATAACTCTCATAGATGACGATGGCGTG
AAGCTCAAATTTCTGTTGTGGGGTGAGCAGACTCTTCTAGCCAACCTTCTGAGTGTTGGAAGCATGATTGGCCTTGATCAGCCTTACATTGCAAGTTCGA
GTGACAGTGCCGTCGAAAGCAGTGGTGACATTTGTCTAGAGTACGGAAGTGCCACTCAGCTGTATCTGGTCCCATTTGTTCAGCATGAAGAGCAAGTGTA
CATATCCTCTTCACAGAACCGATATCATGGATCAAGGCTGACGTTGACTGCTGTAGATCCTACACAGGGCCCCAAAGTCTCACAGGTGATGTTACCGTGT
GATTCTCTAGGCTCAATTGACTTCAGCAGTTATCCATTCCGATCATTTGTAACTGATCTAGGCGACAAGATGACTGGCATCAGCCTCTACGGTGTTGTGA
CAGACATTCGCCGTGAAAGAAGTACCACAAAAGCAATTTTCTCTCTGAGGATTGAGGATTCAACAGGGTCGATTTGCACGAAGCTCCACTTTGTTACATC
TTGCCTTGAAGTGTCATGGTTTGAGAATCAAGCCGGGTCGTCATTTGTGAACCTTAGTTGTTTGCCAGCTTTACTAAACTCCTCATGCCTCCATAAGTTA
TCTCGCCTTTCCGACCTGTATAACCATTCCAGCTCTACTTATGTAAGGACGATCTTCTTTTCCATCTCAAGGTTTTTCCTTACTACCCCCATCGTTTACG
TCTCTCGATTGATTGATGTTTTATACCGTTCGTTGGTGGTGCAACAGATATGCAGAGTGCGGCTTGATCAGGTCGATCAATGCCACGTCAACACAGGATT
TGCACACTCAATTTGTGGCCGGCCTGCAGTAAACACTCCGTCCGGGGATATGGAATGCAGCTTCTGTCAGTGCAGTTACGAACGCTCGGAGGTGGTCCAG
ACATTTTACCTGAAGATCCCCGTTGCAGATGAAACGGGAAAGATATTTGGGTGGTGCAGTGGCCCTACAGCTGCGGAGATGCTGCAAATATCCTCTGATG
AGTTCTGTCAGCTCCCGGAGGAAGAACAGTATATGTATCCATTGTCGCTGGAGAACGAAAGCTTCGTAATTGCGTTGGTGAGTTCCAGGAGGGAAGGATA
TGGTGCTGGTCGTTGCATTGATGTGGAGGATGACACAGTTTCGTGGGAGATTACTCGTGCTCTCAATGTCAGCAATGGCGGATGA
AA sequence
>Lus10016902 pacid=23179080 polypeptide=Lus10016902 locus=Lus10016902.g ID=Lus10016902.BGIv1.0 annot-version=v1.0
MSSFAKQREVDCLNGVCSMGVDYKEADDEEDPFLAFIDYAISVLSPEEEGGGGEDSNTAEDGAQTSGPSWNWIAARIMKTCVAYSSGVTAGILLSELSQA
WTEQHRFRAPKKRPEIINQLKMKHKRSKLPNTVTIDSIYEKNFLTRTNVLEAVIVDIFLLPGTQIYMLTLGDFWSSNTIDLFMHRRYYDLVHPQSAILKK
GREVFLTGCYLRTAREGCGSPRLLPTEYLVIILDDDRDDDAMLIAAQFCSDTFSSVSLKQAKDGVAYSLYGRIESIGPLEAKGSVGNERKQITLIDDDGV
KLKFLLWGEQTLLANLLSVGSMIGLDQPYIASSSDSAVESSGDICLEYGSATQLYLVPFVQHEEQVYISSSQNRYHGSRLTLTAVDPTQGPKVSQVMLPC
DSLGSIDFSSYPFRSFVTDLGDKMTGISLYGVVTDIRRERSTTKAIFSLRIEDSTGSICTKLHFVTSCLEVSWFENQAGSSFVNLSCLPALLNSSCLHKL
SRLSDLYNHSSSTYVRTIFFSISRFFLTTPIVYVSRLIDVLYRSLVVQQICRVRLDQVDQCHVNTGFAHSICGRPAVNTPSGDMECSFCQCSYERSEVVQ
TFYLKIPVADETGKIFGWCSGPTAAEMLQISSDEFCQLPEEEQYMYPLSLENESFVIALVSSRREGYGAGRCIDVEDDTVSWEITRALNVSNGG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G17030 Nucleic acid-binding proteins ... Lus10016902
[exp]
0 1
AT1G08840 EMB2411 embryo defective 2411, DNA rep... Lus10010991
[exp]
2.0 0.8888
AT3G12530 PSF2 PSF2 (.1.2) Lus10000955
[exp]
2.2 0.8849
AT1G67630 EMB2814, POLA2 EMBRYO DEFECTIVE 2814, DNA pol... Lus10036982
[exp]
4.8 0.9132
AT2G37690 phosphoribosylaminoimidazole c... Lus10005526
[exp]
5.4 0.8450
AT1G75150 unknown protein Lus10010814
[exp]
6.6 0.9088
AT1G03360 ATRRP4 ribosomal RNA processing 4 (.1... Lus10008171
[exp]
10.2 0.8177
AT1G15460 ATBOR4 ARABIDOPSIS THALIANA REQUIRES ... Lus10019443
[exp]
13.3 0.8744
AT3G18524 ATMSH2, MSH2 MUTS homolog 2 (.1) Lus10032469
[exp]
13.5 0.8891
AT1G20693 HMGBETA1, NFD2,... NUCLEOSOME/CHROMATIN ASSEMBLY ... Lus10016695
[exp]
14.1 0.8714
AT1G60080 3'-5'-exoribonuclease family p... Lus10034605
[exp]
16.4 0.8039

Lus10016902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.