Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23060 170 / 7e-49 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) AT4G37580 167 / 5e-48 UNS2, COP3, HLS1 UNUSUAL SUGAR RESPONSE 2, HOOKLESS 1, CONSTITUTIVE PHOTOMORPHOGENIC 3, Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT2G30090 162 / 5e-46 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT5G67430 151 / 7e-42 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002468 [exp] 173 / 6e-50 AT2G23060 589 / 0.0 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10025191 [exp] 165 / 9e-47 AT2G23060 584 / 0.0 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10026088 [exp] 163 / 6e-46 AT2G23060 369 / 1e-125 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10002314 [exp] 160 / 1e-45 AT4G37580 335 / 3e-113 UNUSUAL SUGAR RESPONSE 2, HOOKLESS 1, CONSTITUTIVE PHOTOMORPHOGENIC 3, Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10016378 [exp] 41 / 0.0006 AT5G13780 292 / 5e-102 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G144700 [exp] 390 / 1e-134 AT2G23060 224 / 2e-69 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.001G279400 [exp] 194 / 2e-58 AT2G30090 374 / 2e-128 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.009G074200 [exp] 194 / 4e-58 AT2G30090 383 / 6e-132 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.001G044100 [exp] 179 / 3e-52 AT4G37580 372 / 4e-127 UNUSUAL SUGAR RESPONSE 2, HOOKLESS 1, CONSTITUTIVE PHOTOMORPHOGENIC 3, Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.005G146100 [exp] 175 / 8e-51 AT2G23060 609 / 0.0 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.007G054200 [exp] 174 / 3e-50 AT2G23060 597 / 0.0 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.003G182500 [exp] 167 / 9e-48 AT2G23060 368 / 3e-125 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.001G261800 [exp] 45 / 3e-05 AT5G13780 301 / 8e-106 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.009G056600 [exp] 43 / 0.0001 AT5G13780 307 / 5e-108 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10016904 pacid=23179121 polypeptide=Lus10016904 locus=Lus10016904.g ID=Lus10016904.BGIv1.0 annot-version=v1.0 ATGGTGGGGGAGCTTGAGAAGAGTTGCGAGAACATAGGGCCAGGTGAGGAAGATAACGAAAGGATCCCCATTTTCAGCAGCATTGTAGGCGACCCTTTAC GCAGGATCAGGCTATACCCTGTTCATGTCATGCTGGTTGCTGAGCTGCGTGACAGTGGGGAGCTTGTGGGCATCGTAAGAGGCTGCATCAAGATTGTTAG GCTTGGAGTAACAAATGTGAGGCTGGGAAGCATCCTTGGTCTCCGAGTCTCTTCCAAGCATCGGAGGATGGGGATCGGGTCAAAGCTGGTGAAATCAGCT GAAGAGTGGCTAATAGGAAAAGGAGCACAGTACGTTCTAATAGCGACTCTGAAGAACAATGTCGCTTCTACGAATCTCTTCACTTCCAGATTCGGATACA CCAACTTTGCCTCTTTGGTAATCTTCGTTCATCGCATTGAACGCCTTCCTCCTCATCAGTTGGCAAAAGAAAACTCTATAATAAAGGTGGAGAAGCTGCA AACTGAGCAAGCGATTTCCTTATACAACGACAAGCTCGGAGGGAGTAACAAGAACAACGTCATGTTTCCTGCCGACTTCGACGCCATTCTCAAAGAAAAC CTGACGCTCGGCACATGGATTTCCTACTTCCAGCAAAACGACGACGATGACGAACGGCTTGATACGGCGTCGTTGGAATCGTGGGTCGTGTTCAGCATTT GGAATTCCTGTGAATCGGTTAACGATCATAACAACAAATCTGTAAATAAGCTATTTCAATCCACCCTAAATCGAGCGAGGAATAAGATCTTCCCTTGCCT GAGATTCCCAATAGCCGAATCGCCGCAAATTCCGCCGCCGCCGTTTGCGGGGTTCCTTTTAGTCTACGGGCTTTACGGGGAAGGAGGGAGGCTGAGGGAG GTAATGGAGTCGGTGTGGAGCTTTCTGATGAAGTTAGCTGAGGATGTGAGGGATTGCAAGGCGATTATTACTGAGCTCGGTGTCTCCGATCCTTTACAGG AGCATGTGCCGCGAGATTATTCATGCGTCTCGTGCGTAGATGACTTCTGGTACTTGAAGAGAGTAGCGGAAGAGCTCGTCGCCGGCGACGATGACCGGAG TGATGATTTGCTTGGGGGATATGCTGGGAATGTGTTGGTTGATCCAAGGGACTTCTAA
AA sequence Show only first row Show all	>Lus10016904 pacid=23179121 polypeptide=Lus10016904 locus=Lus10016904.g ID=Lus10016904.BGIv1.0 annot-version=v1.0 MVGELEKSCENIGPGEEDNERIPIFSSIVGDPLRRIRLYPVHVMLVAELRDSGELVGIVRGCIKIVRLGVTNVRLGSILGLRVSSKHRRMGIGSKLVKSA EEWLIGKGAQYVLIATLKNNVASTNLFTSRFGYTNFASLVIFVHRIERLPPHQLAKENSIIKVEKLQTEQAISLYNDKLGGSNKNNVMFPADFDAILKEN LTLGTWISYFQQNDDDDERLDTASLESWVVFSIWNSCESVNDHNNKSVNKLFQSTLNRARNKIFPCLRFPIAESPQIPPPPFAGFLLVYGLYGEGGRLRE VMESVWSFLMKLAEDVRDCKAIITELGVSDPLQEHVPRDYSCVSCVDDFWYLKRVAEELVAGDDDRSDDLLGGYAGNVLVDPRDF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37580		UNS2, COP3, HLS...	UNUSUAL SUGAR RESPONSE 2, HOOK...		Lus10016904 [exp]	0	1
					Lus10016868 [exp]	8.1	0.9956
AT1G49410		TOM6	translocase of the outer mitoc...		Lus10020801 [exp]	9.7	0.9658
					Lus10006079 [exp]	11.5	0.9956
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Lus10023578 [exp]	14.1	0.9956
AT1G49410		TOM6	translocase of the outer mitoc...		Lus10007383 [exp]	15.3	0.9489
AT3G28470	MYB	TDF1, ATMYB35	DEFECTIVE IN MERISTEM DEVELOPM...		Lus10039462 [exp]	15.7	0.9432
AT1G15780			unknown protein		Lus10023978 [exp]	16.2	0.9956
AT2G23810		TET8	tetraspanin8 (.1)		Lus10027256 [exp]	18.2	0.9956
AT3G48770			DNA binding;ATP binding (.1)		Lus10032551 [exp]	19.9	0.9956
AT1G18720			Protein of unknown function (D...		Lus10001647 [exp]	21.5	0.9956

Compare expression of checked genes

Lus10016904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.