Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G66652 90 / 7e-18 fip1 motif-containing protein (.1.2) AT5G58040 73 / 1e-12 FIP1[V], ATFIP1[V], FIP1[V], ATFIP1[V], FIP1[V], ATFIP1[V], FIP1[V], ATFIPS5, ATFIP1[V], FIP1[V], A homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019610 [exp] 70 / 1e-11 AT5G58040 412 / 6e-127 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1) Lus10040030 [exp] 67 / 1e-10 AT5G58040 389 / 5e-117 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G145150 [exp] 182 / 1e-46 AT5G58040 107 / 4e-23 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1) Potri.006G187400 [exp] 71 / 6e-12 AT5G58040 355 / 1e-102 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1) Potri.018G110100 [exp] 65 / 4e-10 AT5G58040 355 / 1e-102 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05182 [flax] [poplar] Fip1 Fip1 motif
Representative CDS sequence Show only first row Show all	>Lus10016905 pacid=23179053 polypeptide=Lus10016905 locus=Lus10016905.g ID=Lus10016905.BGIv1.0 annot-version=v1.0 ATGGAAGATTTCCTGGACGACGACGATGACAATGACGACCTATATGCAGACGTCGAAGTTCAAGCAACTTCCGCCATGACCTCTGCGAATAGCTCTGCTA AACCTTACTCGGCGCCGGAGCAGGATTATAAGGGAAGTAAAAGCAATGCTGACAAGGTAGTGCCGACTTCAGGAGGCGGAAACTTCCCCACCAGCCCCAA TCCGGTTAATAACTCCGTCTGCGGCGAGGTATCCAGAAAATCGGAGGCGGAAGAAGGGAGCGAAAGTGATGATGATGGTTTGAATATCGTTTTGAACGAC GAGGACGGGGATCCGATTCCTCATACTTCAGGCTGCGGCGGCGGGTATGAGGAGGCGGACGAAGGTCTTGTTGGCAGCGGATTGGAAACCGGCGGCAATG GAAGTTGGCAGGGTAACGGCGTGCAGAGGAGCTACAGTTTGCAGCATCACCGATACAAGGAAAAGAGGCTCTACCCATCAGCTTTCCCGAAAGAGAATGA ATCATCAAGTGTGGTGGCGTCTCATTCTCTTAAGTTTATGAGAAGTGATTCAGACAATAACAGGCTCTTGCAACACAATGCAGCAAACACAGATTTAGTT TCTAATGATTATGCTATGGCCAATTCAGTTGTATATCATGGCGGATATGGTTGTTCACTTCCATGGCATAGGACCATATTTGATGTAAATATAGACACAT TTGAAGAGAAAAGATGGAGGCATCCTGGAGCAAATATGTCGGCTTTTTTCAATTTTGGTTTTGATGAGGACAGTTGGAGACAGTACAACACTTCTATGCC AAAAGGACGGGCAATTGAGGTTGAAGATAGTGGTGCTGAACGTTTGCCAACAATGAATCAAAGCTGCCCGGAAAACTGGGAGTCTGATGTTGTTATACAG ATCAAGGTGCAGGAATTCGAAGAAAATTCAGGTGCATCTAGCAAGGTGGATTTGAGCGACAAAAGTAATGGAGATAAAGCATTAAGAAGCTGTGAATTGA GCACTGGTGATGTGGGAGAGGCCTCCCATTTGATTGGGCCCAATGGTGGTCAAATGTCTATGGGATCCGCTGAAGGAAATACTAGGTCATCCCATTCAAT GTTGGAAGCCAACAAATTCGCCCCTCGTCATGATAACTCTGAAAGAGACCAGGTTTCTGATTCAGATGAGCATCACCCTCACAGAAATCGGGCTAAAACT GCCGAGGATACTGAATCTGTTGGATGTGAAAGAGATTCAAAGAATGAGTTTGAAAGGAATATGAGCAAGTCTTATCATGATAACTGTGAAACAGAGCAGA TTGATGAGCATCATCCTCATAGAAATTGGGATAAAACTGCTGAGGTTACTGAATCTGTTGGAAGGGAAAGAGATTCAAAGAATGAATTTGAAAGAAATGT TAGCATGATTGATCAACATCGGAGTAATAGTGTCTCATTGCTTGATGACAAAAGTCATCTTAGCCTGACACTCTCTTGTTCTGAAAGTGAAACAGAACCT TCAGGAGAAAGTTGTCACGGTGTACATAGGCGTTCATCTTTGAGAACTGAGTTGCGGGATTCAAGCACATCTGGCCACAATAGTTGTAGAAGTAATGACA GAAAACAAGCATATTTTGGGCAAAAATGCATGATAGATGAAAGATTCTCAGACGGGAGACGACCAAGTGAAGCAGAAAGATACCGAAGAGTTTCTGAGCA TCAAAAGTGTCAGGATGAAAATGATAACCAGTCTACAAAGGGTAGGCTTATTGGTAGTGACAGACAGATTAAAGTTCGGCATGATTTAGATCTTCCCAAA AGAAAAGATTCGTCTTACCTCAGAGCCAGAGATTTTCCCCTTGGAGATGGTAGTCAAAGGAGGGCTGGTAGATATTTTGAAGTTGATGATAGAAGACACA CTCAGAATACACGTAATCAAATCTCTAGAAGCGAGGCAGATATGTGGGACGAAGAAAATCGTAATCACAGTGCCTCTCTTCATAATAGAAGTTTCAGATA TCAGCACAGTATTGATGTTGATCGCGATTACGGGGGTGAGGAAATCTCCCCTTATGTTACTGTTTCTCCCATGCTCCACAGAAAGCATTTGTCTGTTAGA GAGAGGCAAGTTCAACCAAGAAGAAAGAGTGAGCAACTAGAATTAGGGAAGAGAAGCCATGATGATTTGGTGTTTAATTCTGTAATGGACTTACGTAGGC ATAAATATGACTCGATGAATGAGAAGTATGAGAGTCATAGTCCAATCTTGGGGAGAGAAATCCGTACACATGAAAGAATGCGTAGAAATAGTGGTAATGC AATGCATGTGGATCATCCTTGGGATGAAGAAGAAGAGATGCTGAGAGAACACTGGAATGATTATCAACGGGACTGGAACCATGATCAGGATCCACACTTC AAGTCTCATACAAGATCTTACACATACAATCAAGGTAGAATGAATGATGGTAATATTCATACAAGATCTGGCAAATATGAGCCAAGGGTTATGGAATATT ACTCGAGGTTGAGGGAAGGAATAGATGATGATCCTGGCACGTATGATGATGGTTTTGTTGGAAATGACATCCGTGGTAACTACAGTAAAGACGATTACAT GGATTTTGATGATCAACATCAGTTTACAAAGAGGAGACACGTCTGGAGATCAAGATTTCATCAGGCGGAAGAACCAATTTCAACTCCGGGAGGTGATCGG CCCTACTTTGATAGAAATTTTTCTTGCTATAGAAAAACTATCAGACAAGACAATATTAATGCAAGTTACAGATATGAGGACAGTGGGATGACTAGTGGAG ATATATTGTTGGAGGAGCATGGGTATGAGACAATAAGAGACGAATACAGGGATAACTTAGTCAACAGAAGTCTCATGTATAGATGTGAGCGTGAGAAGAT GGTCAGAACATACGTAAAAGATCCAGTTGATTTAATTTTTGGTGAAGCAAAGCCATCTGGAATTCATTCTACCTACGGGAGCTTATCCTTCGGTAGATCC AGAAAGCAGTGCCTGAAGCAAGCCAAGCCAAAATTCCAGAAGCTTTCAACCGCACCTCTTTCCGGGAAAGCAAACAGAAGGCATAACGTGGGAACTAACG GCAGCCAAGATGCTACTAACGAGTCAGATATCGAAGAGGGGCAGATAATTACTGAAGAAGCAATGATGGCAGTTCCCCGATCCAATACGAACAAGAAGAA AGCACTCCAGAATGCGAATGCTGCAGCTAAAAAGGCTTATGACGAACAATGGCTGCAGGATAGATTGGCAAAGATGGAGAAGCGAAGGGAGCGGGTCAAG GAGACTGCTACTACTCTTGCGGCTGCTCCAGAGAAGGTAACAGATCAAATTCCTGCCTCTTCCCAGCTACAAGCTGTTGCGTTAGTTAATAGTAGTCTTG AAACTAAGCAAGAACGGCCGGCTAGAAAGAGGCGCTGGACTGGATCTTGA
AA sequence Show only first row Show all	>Lus10016905 pacid=23179053 polypeptide=Lus10016905 locus=Lus10016905.g ID=Lus10016905.BGIv1.0 annot-version=v1.0 MEDFLDDDDDNDDLYADVEVQATSAMTSANSSAKPYSAPEQDYKGSKSNADKVVPTSGGGNFPTSPNPVNNSVCGEVSRKSEAEEGSESDDDGLNIVLND EDGDPIPHTSGCGGGYEEADEGLVGSGLETGGNGSWQGNGVQRSYSLQHHRYKEKRLYPSAFPKENESSSVVASHSLKFMRSDSDNNRLLQHNAANTDLV SNDYAMANSVVYHGGYGCSLPWHRTIFDVNIDTFEEKRWRHPGANMSAFFNFGFDEDSWRQYNTSMPKGRAIEVEDSGAERLPTMNQSCPENWESDVVIQ IKVQEFEENSGASSKVDLSDKSNGDKALRSCELSTGDVGEASHLIGPNGGQMSMGSAEGNTRSSHSMLEANKFAPRHDNSERDQVSDSDEHHPHRNRAKT AEDTESVGCERDSKNEFERNMSKSYHDNCETEQIDEHHPHRNWDKTAEVTESVGRERDSKNEFERNVSMIDQHRSNSVSLLDDKSHLSLTLSCSESETEP SGESCHGVHRRSSLRTELRDSSTSGHNSCRSNDRKQAYFGQKCMIDERFSDGRRPSEAERYRRVSEHQKCQDENDNQSTKGRLIGSDRQIKVRHDLDLPK RKDSSYLRARDFPLGDGSQRRAGRYFEVDDRRHTQNTRNQISRSEADMWDEENRNHSASLHNRSFRYQHSIDVDRDYGGEEISPYVTVSPMLHRKHLSVR ERQVQPRRKSEQLELGKRSHDDLVFNSVMDLRRHKYDSMNEKYESHSPILGREIRTHERMRRNSGNAMHVDHPWDEEEEMLREHWNDYQRDWNHDQDPHF KSHTRSYTYNQGRMNDGNIHTRSGKYEPRVMEYYSRLREGIDDDPGTYDDGFVGNDIRGNYSKDDYMDFDDQHQFTKRRHVWRSRFHQAEEPISTPGGDR PYFDRNFSCYRKTIRQDNINASYRYEDSGMTSGDILLEEHGYETIRDEYRDNLVNRSLMYRCEREKMVRTYVKDPVDLIFGEAKPSGIHSTYGSLSFGRS RKQCLKQAKPKFQKLSTAPLSGKANRRHNVGTNGSQDATNESDIEEGQIITEEAMMAVPRSNTNKKKALQNANAAAKKAYDEQWLQDRLAKMEKRRERVK ETATTLAAAPEKVTDQIPASSQLQAVALVNSSLETKQERPARKRRWTGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G66652			fip1 motif-containing protein ...		Lus10016905 [exp]	0	1
AT4G27490			3'-5'-exoribonuclease family p...		Lus10041318 [exp]	3.3	0.9443
AT4G02930			GTP binding Elongation factor ...		Lus10027995 [exp]	3.5	0.9625
AT5G10920			L-Aspartase-like family protei...		Lus10032846 [exp]	3.9	0.9558
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Lus10023255 [exp]	4.5	0.9550
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10039260 [exp]	4.5	0.9623
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10022832 [exp]	5.3	0.9555
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Lus10040546 [exp]	6.5	0.9509
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10034395 [exp]	6.5	0.9494
AT2G34570		MEE21	maternal effect embryo arrest ...		Lus10001157 [exp]	6.8	0.9368
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Lus10000982 [exp]	12.4	0.9453

Compare expression of checked genes

Lus10016905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.