Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17040 754 / 0 HCF107 high chlorophyll fluorescent 107 (.1.2) AT4G03430 89 / 2e-17 EMB2770, STA1 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) AT5G45990 88 / 2e-17 crooked neck protein, putative / cell cycle protein, putative (.1) AT5G41770 77 / 4e-14 crooked neck protein, putative / cell cycle protein, putative (.1) AT3G13210 70 / 6e-12 crooked neck protein, putative / cell cycle protein, putative (.1) AT3G51110 52 / 1e-06 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037766 [exp] 1174 / 0 AT3G17040 753 / 0.0 high chlorophyll fluorescent 107 (.1.2) Lus10018580 [exp] 104 / 2e-22 AT4G03430 1566 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) Lus10039811 [exp] 102 / 1e-21 AT4G03430 1560 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) Lus10034294 [exp] 85 / 2e-16 AT5G41770 1153 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10041477 [exp] 84 / 3e-16 AT5G41770 1161 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G145000 [exp] 835 / 0 AT3G17040 797 / 0.0 high chlorophyll fluorescent 107 (.1.2) Potri.013G135300 [exp] 94 / 2e-19 AT4G03430 1470 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) Potri.001G094400 [exp] 87 / 3e-17 AT5G41770 1117 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Potri.003G137200 [exp] 86 / 8e-17 AT5G41770 1150 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Potri.016G080000 [exp] 44 / 0.0004 AT2G37400 342 / 4e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G035600 [exp] 44 / 0.0007 AT5G28740 1418 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016906 pacid=23179102 polypeptide=Lus10016906 locus=Lus10016906.g ID=Lus10016906.BGIv1.0 annot-version=v1.0 ATGGCAATGCAGCTCTGCTCTCCTCCTTCGGCCTCTACTTCATCTGCATCTTCCTCCTACTGCGCTTCTTGTTCAAAGCCCAGCTTCACATTCTTCTCTC CTCATCATAACCGTCGCAACTTCAAAATACCGAAGAAGAAGCCATCAGTACTCCGGTCCGGACAAGCTTCCGCGGTCCTAATGGACCGCTCGGTGAAATC ACCGCCGGGGAGGAAAATCATTTCGGCGGAGAAAAGACCGCCGTCGACGACGGAGGAAGGAGTGCTTGTGGTGCGCAGGCCAAAGATCGAGTCCGACGGT GGCGGAATCGTTGACGAGGAGAGGAGATTGAGGAAGGAGAGGAAAAGGAAACCTTCTGAGATCATGGACGAAAGGCTTGAGGAATTCGCTAAAAAAATGC CGATTTTCGAGCCTGGGAGAGTGGAGGCGGAGGAGGATCAGGCCAAGGCTCTTACGGTGAATTTGGATCTGGCTTTGTACAAGGCCAAAGTGTCAACCAG GAATTTGAAGTACCAGGAAGCTGAGGCCATACTCCAGAAGTGTATAAGTAGATGGCCAGAGGATGGGAGAGCGTACGTTGCATTAGCGAAGGTCTTGGGG AAGCAATCCAAATCAGGAGACGCTAGAGCTGTGTATGAGAAAGGCTGCCAAGCTACTCAAGGAGAGAATCCTTACATTTGGCAGTGCTGGGCAGTTTTGG AAAACAGGATGGGTAATGTAAGGAGGGCAAGGGAACTGTTCGATGCGGCCACGGTTGCTGACAAGAAGCACGTAGCTGCCTGGCATGGTTGGGCAGTTCT AGAGCTTAAACAGGGAAATGTCAAGAAAGCAAGACAACTACTCGCCAAAGCAATCAACTACTGTGGAGGGAATGAGTACGTTTACCAAACATTAGCTCTG TTGGAAGCTCGAGCAAATCGCACTGAGCAGGCCCGTTACCTGTTTAGGCAAGCAACTAAGTCGAATCCGAATAGTTGCGCCAGTTGGCTCGCATGGGCGC AGATGGAGATGCAAGTGGAGAATAACCTTGTTGCTAGAAAGCTGTTTGAGAAAGCAGTCCAGGCAAGTCCCAAGAACAGGTTTGCTTGGCAAGTGTGGGG AACATTTGAGGCAAACATAGGCAATGTTGAAAAGGCAAGGAAGCTCTTAAAGATAGGCCATGCTCTCAACCCAAGGGATCCTGTTATACTTCAGTCTCTT GCTTTGATTGAATACAAGCACTCCACAGCGAATCTCGCAAGAGTGTTGTTCAGGAGAGCATCTGAATTGGACCCCAGGCATCAGCCAGTATGGATTGCTT GGGGATGGATGGAATGGAAAGAAGGGAACATCTCCAATGCAAGGGCATTGTACCAAAAAGCTCTTTCAATTAACACAACCACTGAAAGTGCTGCTCGATG CCTACAGGCATGGGGAGTTCTTGAACAAAGAGCCGGTAACATATCAGCAGCTCGACGATTGTTTAGGTCATCTTTAAACATAAACTCTCAGAGTTATGTT ACATGGATGACATGGGCAAAACTCGAGGAGGATCAAGGTAATGCCATCCGCGCTGAAGAGATCCGTGACCTCTACTTCCAACAGAGAATAGAAGTGGTGG ACGATTCTTCGTGGGTGACAGGGTTCTTTGACATCATCGATCCAGCACTTGACAGCATAAAGAGGCTCCTCAACTTGGACCAGAATCTAATCAACAAGAA GGAACCAGAAAACAGCAGCACCACATCAGGAGCTAATGAGGGTAACAGCGATGACAATATTGGCAGAACTTATCCTGACGACGAAAGCTCCCTCAACATA GATTCCTTCATCAAGGGGAGATTATCTCTTGATCCGGCTAAATTAGACGCCGTTCTAGAGGAGGCTCGTAGCCTATCGGCATCGCCAAGACGAATATGGA GAGCAGACCAAAGATCATCTTCCTCCATTTGCTGGGCAGTTTTGGAAAACAGGATGGGTAATGTAAGGAGGGCAAGGGAACTGTTCGATGCGGCCACGGT TGCTGACAAGAAGCACGTAGCTGCCTGGCATGGTTGGGCAGTTCTAGAGCTTAAACAGGGAAATGTCAAGAAAGCAAGACAACTACTCGCCAAAGCAATC AACTACTGTGGAGGGAATGAGTACGTTTACCAAACATTAGCTCTGTTGGAAGCTCGAGCAAATCGCACTGAGCAGGCCCGTTACCTGTTTAGGCAAGCAA CTAAGTCGAATCCGAATAGTTGCGCCAGTTGGCTCGCATGGGCGCAGATGGAGATGCAAGTGGAGAATAACCTTGTTGCTAGAAAGCTGTTTGAGAAAGC AGTCCAGGCAAGTCCCAAGAACAGGTTTGCTTGGCAAGTGTGGGGAACATTTGAGGCAAACATAGGCAATGTTGAAAAGGCAAGGAAGCTCTTAAAGATA GGCCATGCTCTCAACCCAAGGGATCCTGTTATACTTCAGTCTCTTGCTTTGATTGAATACAAGCACTCCACAGCGAATCTCGCAAGAGTGTTGTTCAGGA GAGCATCTGAATTGGACCCCAGGCATCAGCCAGTATGGATTGCTTGGGGATGGATGGAATGGAAAGAAGGGAACATCTCCAATGCAAGGGCATTGTACCA AAAAGCTCTTTCAATTAACACAACCACTGAAAGTGCTGCTCGATGCCTACAGGCATGGGGAGTTCTTGAACAAAGAGCCGGTAACATATCAGCAGCTCGA CGATTGTTTAGGTCATCTTTAAACATAAACTCTCAGAGTTATGTTACATGGATGACATGGGCAAAACTCGAGGAGGATCAAGGTAATGCCATCCGCGCTG AAGAGATCCGCGACCTCTACTTCCAACAGAGAATAGAAGTGGTGGACGATTCTTCGTGGGTGACAGGGTTCTTTGACATCATCGATCCAGCACTTGACAG CATAAAGAGGCTCCTCAACTTGGACCAGAATCTAATCAACAAGAAGGAACCAGAAAACAGCAGCACCACATCAGGAGCTAATGAGGGTAACAGCGATGAC AATATTGGCAGAACTTATCCTGACGACGAAAGCTCCCTCAACATAGATTCCTTCATCAAGGGGAGATTATCTCTTGATCCGGCTAAATTAGACGCCGTTC TAGAGGAGGCTCGTAGCCTATCGGCATCGCCAAGACGAATATGGAGAGCAGACCAAAGATCATCTTCCTCCATTGTAAGCTAA
AA sequence Show only first row Show all	>Lus10016906 pacid=23179102 polypeptide=Lus10016906 locus=Lus10016906.g ID=Lus10016906.BGIv1.0 annot-version=v1.0 MAMQLCSPPSASTSSASSSYCASCSKPSFTFFSPHHNRRNFKIPKKKPSVLRSGQASAVLMDRSVKSPPGRKIISAEKRPPSTTEEGVLVVRRPKIESDG GGIVDEERRLRKERKRKPSEIMDERLEEFAKKMPIFEPGRVEAEEDQAKALTVNLDLALYKAKVSTRNLKYQEAEAILQKCISRWPEDGRAYVALAKVLG KQSKSGDARAVYEKGCQATQGENPYIWQCWAVLENRMGNVRRARELFDAATVADKKHVAAWHGWAVLELKQGNVKKARQLLAKAINYCGGNEYVYQTLAL LEARANRTEQARYLFRQATKSNPNSCASWLAWAQMEMQVENNLVARKLFEKAVQASPKNRFAWQVWGTFEANIGNVEKARKLLKIGHALNPRDPVILQSL ALIEYKHSTANLARVLFRRASELDPRHQPVWIAWGWMEWKEGNISNARALYQKALSINTTTESAARCLQAWGVLEQRAGNISAARRLFRSSLNINSQSYV TWMTWAKLEEDQGNAIRAEEIRDLYFQQRIEVVDDSSWVTGFFDIIDPALDSIKRLLNLDQNLINKKEPENSSTTSGANEGNSDDNIGRTYPDDESSLNI DSFIKGRLSLDPAKLDAVLEEARSLSASPRRIWRADQRSSSSICWAVLENRMGNVRRARELFDAATVADKKHVAAWHGWAVLELKQGNVKKARQLLAKAI NYCGGNEYVYQTLALLEARANRTEQARYLFRQATKSNPNSCASWLAWAQMEMQVENNLVARKLFEKAVQASPKNRFAWQVWGTFEANIGNVEKARKLLKI GHALNPRDPVILQSLALIEYKHSTANLARVLFRRASELDPRHQPVWIAWGWMEWKEGNISNARALYQKALSINTTTESAARCLQAWGVLEQRAGNISAAR RLFRSSLNINSQSYVTWMTWAKLEEDQGNAIRAEEIRDLYFQQRIEVVDDSSWVTGFFDIIDPALDSIKRLLNLDQNLINKKEPENSSTTSGANEGNSDD NIGRTYPDDESSLNIDSFIKGRLSLDPAKLDAVLEEARSLSASPRRIWRADQRSSSSIVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17040		HCF107	high chlorophyll fluorescent 1...		Lus10016906 [exp]	0	1
AT5G21222			protein kinase family protein ...		Lus10023650 [exp]	3.0	0.9262
AT2G33700			Protein phosphatase 2C family ...		Lus10016030 [exp]	6.2	0.8707
AT5G21222			protein kinase family protein ...		Lus10034924 [exp]	6.5	0.9059
AT3G17040		HCF107	high chlorophyll fluorescent 1...		Lus10037766 [exp]	7.5	0.8901
AT5G58330			lactate/malate dehydrogenase f...		Lus10038668 [exp]	7.7	0.9102
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10017673 [exp]	7.7	0.8959
AT1G44446		ATCAO, CH1	CHLOROPHYLL A OXYGENASE, Pheop...		Lus10000218 [exp]	12.0	0.8811
AT3G56940		CRD1, CHL27, AC...	COPPER RESPONSE DEFECT 1, dica...		Lus10035398 [exp]	12.2	0.9001
AT5G58330			lactate/malate dehydrogenase f...		Lus10037935 [exp]	13.0	0.8980
AT1G44446		ATCAO, CH1	CHLOROPHYLL A OXYGENASE, Pheop...		Lus10042718 [exp]	15.5	0.8723

Compare expression of checked genes

Lus10016906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.