Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04690 890 / 0 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT5G28680 877 / 0 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT3G51550 771 / 0 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT1G30570 567 / 0 HERK2 hercules receptor kinase 2 (.1) AT5G61350 562 / 0 Protein kinase superfamily protein (.1) AT5G54380 562 / 0 THE1 THESEUS1, protein kinase family protein (.1) AT5G38990 550 / 0 Malectin/receptor-like protein kinase family protein (.1) AT2G21480 549 / 0 Malectin/receptor-like protein kinase family protein (.1) AT4G39110 549 / 0 Malectin/receptor-like protein kinase family protein (.1) AT3G46290 533 / 2e-177 HERK1 hercules receptor kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037768 [exp] 801 / 0 AT3G04690 400 / 1e-147 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10021998 [exp] 787 / 0 AT3G04690 929 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10042537 [exp] 786 / 0 AT3G04690 942 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10014185 [exp] 745 / 0 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10022728 [exp] 689 / 0 AT3G51550 1184 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10037887 [exp] 591 / 0 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10028805 [exp] 578 / 0 AT4G39110 1139 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10017478 [exp] 578 / 0 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10042844 [exp] 548 / 0 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G105500 [exp] 965 / 0 AT3G04690 999 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.010G145600 [exp] 962 / 0 AT3G04690 1027 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.013G042500 [exp] 856 / 0 AT3G04690 1036 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.005G055200 [exp] 854 / 0 AT5G28680 1026 / 0.0 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) Potri.006G110000 [exp] 751 / 0 AT3G51550 1256 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.016G138700 [exp] 748 / 0 AT3G51550 1252 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096600 [exp] 671 / 0 AT3G51550 829 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G095900 [exp] 670 / 0 AT3G51550 845 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096000 [exp] 661 / 0 AT3G51550 832 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096800 [exp] 653 / 0 AT3G51550 823 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10016907 pacid=23179048 polypeptide=Lus10016907 locus=Lus10016907.g ID=Lus10016907.BGIv1.0 annot-version=v1.0 ATGAAACGCCGTACATGCCTCTTGTTTTCTTCCATCCTCTTGGTAACATTGTTAGCGATGGCAGACCCGGCTCTGGGTCAGGCGCCGGCGCCGGCTCCAA CGAAGGCGCCGCCGAAATCGAAATGTTTCATCGTCTCGTGCGGCATCACGGAGGAAGAAGCCGACGCCAACGGCGAGAAATGGAAACCGGACGACGAATA CCTCAATCCCTCCGGCTCCGGCGAGGCCGCTACGGCGTCCTATCAGGACCCTTCTCTGGACTCCACCGTGCCGTTCATGTCCGCCAGGATTTTCAAGTCT CCCGGTGGTTATAAATTCCCCGTCCCGTCCGACGCACGTGTCATGATCCGGTTCTACTTCTACGCTGCCACGTACGGCGACCTCGACGCTGGAAATTCCT ATTTTGCCCTCACGGCGAATGGCTACCAGCTCCTCAATAACTTCAGCGCTTCCATCGTGTCCAAGGCGCTCACCCAGACGTACCTCGTCAAGGAATTCTC GCTTTTGCCCCCGCCGTCGGGTTCCGTCGACGTCGTCTTCACGCCGTCGAAGGATTACAACGACTCGTTCGCCTTTGTCAACGGGATCGAGGTCATCCCG ATGATGGACATCTACAGTGACTCTCCGCCGTTGACCGGGTTCACGGATCAGACGTTGGATTTGACGGCGTACAGCTTGCAGACGATGTACAGGGTGAACG TCGGCGGGCAGGTGATTCCTCCGTTGAATGATTCGGCTGGGCTGGAGAGGACTTGGTACAACGACGCTCCTTATCTATACGGCAAAGTTGGAGGGAGGAC GCCGGCGTTTCCCGTAAGTACAATCAAGTACCCGACTAAACAAGTACCCGAATCCGTCGCCCCGGCTTTGGTCTACGCCACCGGCCGAACCATGCTTGAG AACGCCACAGTGAACTGGAATTTCCAGGTGGACGTCAATTACACCTACTTCGTCCGTCTCCACTTTTGCGACGGCGAAATGGGGAGAGTCAACCAGCGTG TCTTCCACATTTATGTCAACAACCGGACAGCACAGAACACCGCTGACGTGGTCGCCTGGACCGGCGGCAAGGGTATTCCAATCTACAAGGACTACGCCGT CTACCAAAACGATAAGAGCGGCGATAATCTGTGGCTAGCCCTCTCCCCCAACGGCGATAGCCACCCGGAATTCTACGACGCAATCCTCAACGGAATAGAG ATCTTCAAGCTCAACAACGTGAAGAAAAGCTTCACCGCCCCGAACCCGGAGATTTCGGAGATGATGACTCTAGCAGAGGAAGCCATGAAGAAGAAGAGCT TCTCCTCCGGATCCGGAACCGCGCAGGTGATCGGCGCAATCGCCGGAGGAGCCACCGGAATAGCGGCGGTGATCGTCGTCTCCGCCGTCGTGTTCAACAA GAAGCGCCGACTGAGCAGCTCCCCGTCATCGAGCTCTAACAATTGGCTCCCGTTGTACGGAAACTCGCACTCCTCGGGGAAATCGACGGGGTCGAGGAAG AGCAACAACAGTAGCAATCTGTCGTCGATCGCTCAGGGGCTATGTCGGCATTTCTCGCTGCAGGAGATCAAGCACGCGACGAAGAATTTCGACGAAGGGA AAGTGATCGGAGTGGGAGGGTTCGGGAAAGTGTACAGAGGAGTAATCGACGGCGGAGCGATGCAGGTGGCGATCAAGAGATCGAATCCGCAATCGGAGCA AGGAGTCAACGAATTTGAGACTGAGATCGAGATGCTCTCCAAGCTTAGGCACAAACACTTGGTCTCCCTAATCGGATTCTGCGATGAAGACGACGAGATG GCACTTGTCTACGATTACATGGCGAACGGAACCCTAAGAGAGCATCTCTACAAAGGGAACAACCCGTCGTTGCCGTGGAAGCAGAGATTGGAGATCTGCA TCGGAGCGGCGAGAGGATTGCATTACCTCCACACGGGAGCGAAGTACACCATCATCCACCGCGACGTAAAGACGACGAACATTCTTCTTGACGACAAATG GGTGGCGAAGGTATCGGACTTCGGGTTATCTAAAACCGGCCCGGATCTGAACAACCAGGCGCACGTTAGCACGGTGGTGAAGGGGAGCTTTGGGTATTTG GATCCGGAGTATTTCAGAAGGCAGCAGTTGACGGAGAAATCAGACGTTTACTCATTCGGCGTCGTTTTGTTCGAGGTTCTATGCGCTAGGCCGGCTCTGA ACCCTAGCTTGCCGAAGGAGCAAGTCAGCTTAGGGGACTGGGCGCTTCAATGCCAGAGGAAGGGGAAATTGGAGGAGATCATTGATCCGTTGTTGAAAGG AGATATAAACAAAGAATGTCTGAAGAAATTCGCCGAGACGGCTGAGAAATGCTTGTCGGATGCAGGGATTCGTCGGCCTTCCATGGGAGATGTGCTCTGG AACCTGGAATTCGCCCTGCAATTACAAGAGAATCCCAGCGCTTCCACCGTAGAGAAAGGGGCGGAGATCGGGGACGGCGGTGGTGGCCGGAAGAGGGGAC TGTCGATTGTAGAAGAAGAGGTTAGTGCGGTGGCGGACGAAGACACCGACGATAGTGAAATTTTTTCGCAGATTGTGAATCCTAAAGGAAGATGA
AA sequence Show only first row Show all	>Lus10016907 pacid=23179048 polypeptide=Lus10016907 locus=Lus10016907.g ID=Lus10016907.BGIv1.0 annot-version=v1.0 MKRRTCLLFSSILLVTLLAMADPALGQAPAPAPTKAPPKSKCFIVSCGITEEEADANGEKWKPDDEYLNPSGSGEAATASYQDPSLDSTVPFMSARIFKS PGGYKFPVPSDARVMIRFYFYAATYGDLDAGNSYFALTANGYQLLNNFSASIVSKALTQTYLVKEFSLLPPPSGSVDVVFTPSKDYNDSFAFVNGIEVIP MMDIYSDSPPLTGFTDQTLDLTAYSLQTMYRVNVGGQVIPPLNDSAGLERTWYNDAPYLYGKVGGRTPAFPVSTIKYPTKQVPESVAPALVYATGRTMLE NATVNWNFQVDVNYTYFVRLHFCDGEMGRVNQRVFHIYVNNRTAQNTADVVAWTGGKGIPIYKDYAVYQNDKSGDNLWLALSPNGDSHPEFYDAILNGIE IFKLNNVKKSFTAPNPEISEMMTLAEEAMKKKSFSSGSGTAQVIGAIAGGATGIAAVIVVSAVVFNKKRRLSSSPSSSSNNWLPLYGNSHSSGKSTGSRK SNNSSNLSSIAQGLCRHFSLQEIKHATKNFDEGKVIGVGGFGKVYRGVIDGGAMQVAIKRSNPQSEQGVNEFETEIEMLSKLRHKHLVSLIGFCDEDDEM ALVYDYMANGTLREHLYKGNNPSLPWKQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDDKWVAKVSDFGLSKTGPDLNNQAHVSTVVKGSFGYL DPEYFRRQQLTEKSDVYSFGVVLFEVLCARPALNPSLPKEQVSLGDWALQCQRKGKLEEIIDPLLKGDINKECLKKFAETAEKCLSDAGIRRPSMGDVLW NLEFALQLQENPSASTVEKGAEIGDGGGGRKRGLSIVEEEVSAVADEDTDDSEIFSQIVNPKGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10016907 [exp]	0	1
AT5G14000	NAC	ANAC084	NAC domain containing protein ...		Lus10032004 [exp]	2.2	0.7451
					Lus10026969 [exp]	2.8	0.7837
					Lus10032433 [exp]	4.7	0.8032
AT2G37470			Histone superfamily protein (....		Lus10006484 [exp]	7.5	0.7153
					Lus10038255 [exp]	10.6	0.7595
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10019238 [exp]	12.5	0.6804
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10015595 [exp]	12.7	0.7337
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10032911 [exp]	13.4	0.7595
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10022633 [exp]	17.0	0.6701
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10018704 [exp]	17.3	0.7150

Compare expression of checked genes

Lus10016907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.