Plant FIBer expression Database

Lus10016908 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G145700
[exp]
329 / 2e-112 ND /
Potri.008G105401
[exp]
85 / 2e-20 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF12617 LdpA_C Iron-Sulfur binding protein C terminal
Representative CDS sequence
>Lus10016908 pacid=23179047 polypeptide=Lus10016908 locus=Lus10016908.g ID=Lus10016908.BGIv1.0 annot-version=v1.0
ATGGAGATTTACGATTCCCTCTCTTTTTTCCTCGCAGAGGCGGTAAGCTTTAGTAGAAAAAGCACCGGCGGCATCCAAAATGTCAAAAAACTCGTCAAAA
CAGCTGGAGTCCCTTCGATAGCTTATGCTCCGTACGAGTCACTGCAGAAAGGCAGCTGGGTCAAGCTTATCTGTGGTGCTAGCTTCGAGGATGTTGTGGA
TATTAGGAATCTCTCACTGGTCTACACTTTAGCAGGAGTTGATTGCATCGATTGTGCGGCTGATCCTGCGGTGGTGAGTGCTGTAAATGAAGGAATTGAT
GCCGCCATGGAGGTTGTGGATCTCCGTAGGCCTTGGGTTATGATCAGTGTCAATGATGATGAGGATCTTCACTTTCGTAAAGCTGAGTTTTATCCTGAGG
ATTGTCCGTCGGACTGCTCGAGGCCCTGCGAGATTGTGTGTCCAGCAAATGCAATTAAGATAAGCGATCATGGTGGTGTTATAACTGAGCGTTGTTATGG
CTGCGGTCGTTGCTTCCCTATTTGCCCTTATGACAAAATAATAAAGTTGTCTTGTAGGCACATTGATCCTTTCAAGGAGTTATGGGATGATTTAAGAAGT
TCAGCTGGATGCCTGAAGCTAGTAGCTATTAGTTTACCTTATCGAGGCGATTCGACTGTACCGTTGATGAATTCAATGCATTCTATCATGGAGCCTCATT
TGAAGTGCCTCAACTTATGGCAGGTCCGCCGCCTCGACACTTAA
AA sequence
>Lus10016908 pacid=23179047 polypeptide=Lus10016908 locus=Lus10016908.g ID=Lus10016908.BGIv1.0 annot-version=v1.0
MEIYDSLSFFLAEAVSFSRKSTGGIQNVKKLVKTAGVPSIAYAPYESLQKGSWVKLICGASFEDVVDIRNLSLVYTLAGVDCIDCAADPAVVSAVNEGID
AAMEVVDLRRPWVMISVNDDEDLHFRKAEFYPEDCPSDCSRPCEIVCPANAIKISDHGGVITERCYGCGRCFPICPYDKIIKLSCRHIDPFKELWDDLRS
SAGCLKLVAISLPYRGDSTVPLMNSMHSIMEPHLKCLNLWQVRRLDT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10016908
[exp]
0 1
AT2G36240 pentatricopeptide (PPR) repeat... Lus10017041
[exp]
1.0 0.8768
AT5G57170 Tautomerase/MIF superfamily pr... Lus10034783
[exp]
3.7 0.8469
AT4G37460 SRFR1 SUPPRESSOR OF RPS4-RLD 1, Tetr... Lus10014863
[exp]
6.0 0.8226
AT4G24470 GATA GATA25, TIFY1, ... Zinc-finger protein expressed ... Lus10042865
[exp]
8.5 0.8120
AT5G51050 APC2 ATP/phosphate carrier 2, Mitoc... Lus10032522
[exp]
15.1 0.8217
AT2G20020 CAF1, ATCAF1 RNA-binding CRS1 / YhbY (CRM) ... Lus10011119
[exp]
15.7 0.8053
AT5G16690 ORC3, ATORC3 origin recognition complex sub... Lus10034596
[exp]
16.6 0.7966
AT1G60890 Phosphatidylinositol-4-phospha... Lus10012689
[exp]
16.6 0.7984
AT5G39980 Tetratricopeptide repeat (TPR)... Lus10041429
[exp]
18.4 0.8184
AT5G02250 ATMTRNASEII, RN... ribonucleotide reductase 1, EM... Lus10010842
[exp]
18.7 0.7939

Lus10016908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.