Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037769 [exp] 117 / 3e-35 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G145700 [exp] 178 / 3e-55 ND / Potri.008G105401 [exp] 69 / 2e-15 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12617 [flax] [poplar] LdpA_C Iron-Sulfur binding protein C terminal
Representative CDS sequence Show only first row Show all	>Lus10016909 pacid=23179036 polypeptide=Lus10016909 locus=Lus10016909.g ID=Lus10016909.BGIv1.0 annot-version=v1.0 ATGAGTGGAGATATAGGACGAGGAGCTACAAGGGAATCAGTCGCCTTTGCTGTACGCCTTGCTGCTGCTAAAGACAGACCTCTTGGTTTGTTTCAGTTGG CTGGTGGCACAAATGCTCACACAGCTGAGGGATTAAAAAGAGAAGGTCTCTTCCAAACAACCTTAGCTACTACTGACGATTCGAAGGATGCGAGATCAAT TGTGCCTTCTGGCGCCTTCATTGGTGGTGTTGCTTTTGGGGGATACGCCCGGAAGATTGTGGGAAGAGTGCTGAGCTCGATGCCATCACAGCAGGGTCCG GGCTGGGTCGAGGATTACCCGGAGCTTCTAGCGGAAGCACTTAGACAAGCTCTTGACTTGGTGGGGACAATGAAACTTTACCATCCTGTGCAGGTTCATG GTTTTGATTCCTGA
AA sequence Show only first row Show all	>Lus10016909 pacid=23179036 polypeptide=Lus10016909 locus=Lus10016909.g ID=Lus10016909.BGIv1.0 annot-version=v1.0 MSGDIGRGATRESVAFAVRLAAAKDRPLGLFQLAGGTNAHTAEGLKREGLFQTTLATTDDSKDARSIVPSGAFIGGVAFGGYARKIVGRVLSSMPSQQGP GWVEDYPELLAEALRQALDLVGTMKLYHPVQVHGFDS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10016909 [exp]	0	1
AT1G73040			Mannose-binding lectin superfa...		Lus10037605 [exp]	5.6	0.8867
AT5G25090		AtENODL13	early nodulin-like protein 13 ...		Lus10003432 [exp]	6.7	0.8254
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10021035 [exp]	7.2	0.8767
AT5G10530			Concanavalin A-like lectin pro...		Lus10007074 [exp]	12.6	0.8301
					Lus10003631 [exp]	12.7	0.8053
AT5G57910			unknown protein		Lus10035808 [exp]	14.7	0.8032
AT2G42770			Peroxisomal membrane 22 kDa (M...		Lus10001421 [exp]	20.3	0.7885
AT2G01290		RPI2	ribose-5-phosphate isomerase 2...		Lus10036094 [exp]	20.8	0.8264
AT3G57810			Cysteine proteinases superfami...		Lus10037002 [exp]	22.4	0.8170
AT5G06800	GARP		myb-like HTH transcriptional r...		Lus10023816 [exp]	22.6	0.8275

Compare expression of checked genes

Lus10016909 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.