Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18790 1835 / 0 OOP1, HY3, PHYB OUT OF PHASE 1, phytochrome B (.1) AT4G16250 1766 / 0 PHYD phytochrome D (.1) AT4G18130 1307 / 0 PHYE phytochrome E (.1) AT1G09570 1201 / 0 FHY2, HY8, FRE1, PHYA ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) AT5G35840 1168 / 0 PHYC phytochrome C (.1) AT2G40940 57 / 7e-08 ERS1 ethylene response sensor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037771 [exp] 2327 / 0 AT2G18790 1848 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Lus10011967 [exp] 1370 / 0 AT4G18130 1444 / 0.0 phytochrome E (.1) Lus10007594 [exp] 1196 / 0 AT1G09570 1852 / 0.0 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) Lus10012151 [exp] 1180 / 0 AT1G09570 1855 / 0.0 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) Lus10006389 [exp] 1161 / 0 AT5G35840 1426 / 0.0 phytochrome C (.1) Lus10012342 [exp] 1096 / 0 AT5G35840 1363 / 0.0 phytochrome C (.1) Lus10004593 [exp] 450 / 6e-148 AT4G18130 462 / 2e-153 phytochrome E (.1) Lus10006388 [exp] 362 / 6e-114 AT5G35840 493 / 8e-165 phytochrome C (.1) Lus10004592 [exp] 312 / 2e-96 AT4G18130 321 / 1e-100 phytochrome E (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G145900 [exp] 2009 / 0 AT2G18790 1820 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Potri.008G105200 [exp] 2006 / 0 AT2G18790 1840 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Potri.013G000300 [exp] 1197 / 0 AT1G09570 1806 / 0.0 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) Potri.001G204200 [exp] 72 / 1e-12 AT1G66340 1216 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.003G032300 [exp] 72 / 3e-12 AT1G66340 1228 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.002G201500 [exp] 70 / 8e-12 AT2G40940 897 / 0.0 ethylene response sensor 1 (.1) Potri.010G074300 [exp] 44 / 0.0005 AT3G23150 877 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [flax] [poplar] GAF PF01590 [flax] [poplar] GAF GAF domain CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain CL0183 [flax] [poplar] PAS_Fold PF08446 [flax] [poplar] PAS_2 PAS fold CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0183 [flax] [poplar] PAS_Fold PF00989 [flax] [poplar] PAS PAS fold CL0161 [flax] [poplar] GAF PF00360 [flax] [poplar] PHY Phytochrome region
Representative CDS sequence Show only first row Show all	>Lus10016911 pacid=23179063 polypeptide=Lus10016911 locus=Lus10016911.g ID=Lus10016911.BGIv1.0 annot-version=v1.0 ATGGCGTCTGGAAGCAAAGGTACATCAGCTCCGTCAGCTGCTGGAGCTTCTTCTCAACAGCTTCTTGGCCACGGCGGAGACCATCGCCGCCGTCAGAATT ACATCCATCAGCAGCAGCAGTCGTCGGGGACAAGCAACTTGAAACCTCAGCCTGGGCAGCCGGAGTCAGTCAGCAATGCGATTGCTCAGAACACCGTCGA CTCCCAGCCTCACGCCGCGTTCGAGCGGTCCGGCGAGTCCGGTAGGTCATTTGATTACTCGCAATCTGTTAGGACAACTAACCAGTCGGTACCGGAGCAG CAAATCACTGCTTACCTCTCCAGAATCCAGCGCGGAGGACACATACAGCCGTTCGGATGCATGATCGCCGTCGACGAAGCTTCCTTCACGGTAATCGGTT ACAGCGAGAACGCACGCGACTTGCTCGCGCTAACGCCTCAGTCAGTTCCTTCTCTGGAGAAGCCAGAGACGTTTTTCGTTGGTGCAGATGTGCGGACTCT ATTCACTTCCTCGAGCTCCGTACTGCTCGAGAAGGCGTTTGGAGCGAGAGAAATCACGCTGCTGAATCCCTTGTGGATCCATTCGAGGAACTCCGGTAAA CCGTTTTACGCGATTCTTCACAGGATTGATGTCGGGATTGTTATCGATTTGGAGCCTGCTAGGACCGAGGACCCTGCCCTGTCAATTGCTGGGGCCGTAC AGTCACAGAAGCTGGCTGTTCGAGCGATTTCGCAGTTGCAATCGCTTCCCGGTGGTGATATTAAGCTTCTGTGTGATACTGTGGTTGAGTGCGTTAGGGA GCTAACAGGTTATGATAGAGTTATGGTGTATAAGTTTCATGAGGACGAACATGGAGAAGTTGTAGCAGAGAATAAAAGAGCTGGTTTGGAACCATACCTT GGTTTGCATTACCCTGCTACTGATATACCACAAGCTTCTAGGTTCTTGTTTAAGCAGAATAGGGTTAGGATGATAGTTGATTGTCATGCTTCTCCAGTTC GTGTTGTTCAGGATGAAGGGCTTATGCAGCCATTGTGCTTGGTAGGTTCCACGCTTCGTGCTCCTCACGGTTGCCATGCTCAGTATATGGCGAATATGGG CTCCGTAGCCTCTTTGGCATTGGCTGTTATAATCAATGGAAGTGATGATGAAGGTATTGGTGGGAGGAATTCCATGAGACTTTGGGGTTTGGTTGTTTGT CATCACACTTCTGCTAGGTGTATACCTTTCCCACTTCGTTATGCTTGTGAGTTCCTAATGCAGGCCTTTGGACTCCAACTAAACATGGAGTTGCAGTTGG CATCACAGTTATCCGAGAAACGAGTTTTAAGGACTCAAACTCTTCTATGTGACATGCTGCTCAGAGATTCGCCTCCTGGGATTGTTACTCAAAGCCCAAG CATTATGGATTTAGTGAAGTGTGATGGAGCCGCACTATATTACCAAGGGATGTATTACCCACTTGGGGTGACTCCTACGGAAGCTCAGATCAAGGACATT GTAGAGTGGTTGTTGGCATTTCATGGTGACTCAACAGGTTTAAGCACTGACAGTTTGGGTGATGCTGGATACCCCGGTGCAGCTTCACTTGGTGACTTAG TTTGCGGAATGGCTGTTGCCTATATCACAAAGAGAGACTTTTTGTTCTGGTTCAGGTCACACTCCGCCAAGGAAATCAAGTGGGGTGGTGCAAAACACTA TCCACAGGACAAGGATGATGGACAGAGGATGCATCCTCGTTCTTCGTTCAAGGCCTTTCTGGAAGTTGTGAGGAGCCGTAGTTTGCCATGGGAGAATGCT GAGATGGATGCCATACATTCTTTGCAACTGATCCTTCGTTATTGTTTTAAGGATACTGAAGCAGCCAATTCTAAATCCGTTGTGCCTTCCCAGCTTGGGG ATATGGAGTTGCAGGGGGTTGATGAACTCAGTTCTGTGGCAAGAGAAATGGTGAGACTAATAGAGACCGCAACTGCTCCGATTTTCGCAGTAGATGTTGA TGGCCGAATTAACGGATGGAATGCAAAGGTCGCTGAATTGACAGGGCTTTCGGTTGAGGAAGCGATGGGGAAATCTTTAGTCCACGACCTTGTTTATCAG GAATATGAAGAAACTGTTGACAAACTTGTTCAACGTGCTATATTAGGCGAAGAAGACAAAGATGTGGAGATAAAGTTGAAGACGTTCGGATCTGAACATA AAAAGAAGGCTATCTTCGTGGTGGTGAATGCTTGCTCTAGTAAGGATTACACTAATAAGATTGTCGGAGTTTGCTTTGTTGGTCAAGATGTCACTGGTCA GAAGGTGGTAATGGACAAGTTCATTCACATACAAGGTGATTACAAGGCCATTGTTCACAGTCCGAATCCTTTGATTCCTCCCATATTTGCTTCGGACCAA AATGCATACTGCTTAGAGTGGAACACAGCCATGGAAAAACTCACAGGTTGGAACAGAGGCGACATTGTTGGGAAAATGTTGGTTGGAGAAGTGTTTGGAG GCTGCTGTCGCCTCAAAGGTGCCAATGCACTGACGAAATTTATGATCGTCTTGCACAATGCAATCGGAGGACAGGAGACCGACAAATTTCCATTTGCCTT CTTTGACAAGAACGGGAAATATGTTCAAGCTCTGTTGACGGCAAATAAGAGATCAAACGTGGAGGGCCAGATTATAGGAGCCTTCTGCTTCTTGCAAATC GCAAGTCCTGAATTGCAGCAGGCTCTGAAAGTACAAAGGGAACAGGAGAAGAGATACTTTGCGAGGATGAAGGAGTTGGCTTACATCTGCCAGGAAATAA AGAACCCTTTAAGTGGTATACGCTTCACTAACTCGCTTTTGGAAGCTACTGATCTTTCTGAAGATCAAAAGCAGTTTCTTGAGACGAGTGCTGCCTGTGA AAGGCAGATGTTAAAGATCATACGAGATGTTGATCTCGAGAGCATCGAAAACGGAACATTGGAGTTTGAGAGAACCGAGTTCAACATCGGGAGTGTAATA AACGCAGTCGTTAGCCAAGTAATGTTGCTGTTGCGGGATAGGAATCTGCAACTGATACGTGACATCCCAGAGGAGATAAAAACTCTGGCAGTGTACGGTG ATCAGCCAAGAATCCAGCAAGTATTGTCCGATTTCTTGCTGAATATGGTGCGTTATGCTCCGTCTTCGGAAAGTTGGGTAGAGATTCACCTCCGTCCCAC TCTTAAACACATCGCCGATGGTGTCACCCATGTACGCACCGAATTCAGGATGGCTTGCCCGGGTGAAGGGCTTCCGGCAGAAGTAGTACAGGACATGTTC AACAGCAGCAAGTGGGGAACTCAGGAAGGGTTGGGGCTAAGCATGTGCAGGAAAATAGTGAAGCTGATGAATGGTGAAGTCCAGTACATCAGAGAGTCTG AAAGGTGTTACTTCCTAGTCATCCTTGAGCTTCCCATGGCTCGAAAAGGAGGCTCGAAAACTGCTGACTAG
AA sequence Show only first row Show all	>Lus10016911 pacid=23179063 polypeptide=Lus10016911 locus=Lus10016911.g ID=Lus10016911.BGIv1.0 annot-version=v1.0 MASGSKGTSAPSAAGASSQQLLGHGGDHRRRQNYIHQQQQSSGTSNLKPQPGQPESVSNAIAQNTVDSQPHAAFERSGESGRSFDYSQSVRTTNQSVPEQ QITAYLSRIQRGGHIQPFGCMIAVDEASFTVIGYSENARDLLALTPQSVPSLEKPETFFVGADVRTLFTSSSSVLLEKAFGAREITLLNPLWIHSRNSGK PFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVECVRELTGYDRVMVYKFHEDEHGEVVAENKRAGLEPYL GLHYPATDIPQASRFLFKQNRVRMIVDCHASPVRVVQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSVASLALAVIINGSDDEGIGGRNSMRLWGLVVC HHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKRVLRTQTLLCDMLLRDSPPGIVTQSPSIMDLVKCDGAALYYQGMYYPLGVTPTEAQIKDI VEWLLAFHGDSTGLSTDSLGDAGYPGAASLGDLVCGMAVAYITKRDFLFWFRSHSAKEIKWGGAKHYPQDKDDGQRMHPRSSFKAFLEVVRSRSLPWENA EMDAIHSLQLILRYCFKDTEAANSKSVVPSQLGDMELQGVDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVAELTGLSVEEAMGKSLVHDLVYQ EYEETVDKLVQRAILGEEDKDVEIKLKTFGSEHKKKAIFVVVNACSSKDYTNKIVGVCFVGQDVTGQKVVMDKFIHIQGDYKAIVHSPNPLIPPIFASDQ NAYCLEWNTAMEKLTGWNRGDIVGKMLVGEVFGGCCRLKGANALTKFMIVLHNAIGGQETDKFPFAFFDKNGKYVQALLTANKRSNVEGQIIGAFCFLQI ASPELQQALKVQREQEKRYFARMKELAYICQEIKNPLSGIRFTNSLLEATDLSEDQKQFLETSAACERQMLKIIRDVDLESIENGTLEFERTEFNIGSVI NAVVSQVMLLLRDRNLQLIRDIPEEIKTLAVYGDQPRIQQVLSDFLLNMVRYAPSSESWVEIHLRPTLKHIADGVTHVRTEFRMACPGEGLPAEVVQDMF NSSKWGTQEGLGLSMCRKIVKLMNGEVQYIRESERCYFLVILELPMARKGGSKTAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Lus10016911 [exp]	0	1
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Lus10037771 [exp]	1.0	0.9157
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10002880 [exp]	8.4	0.7636
AT4G24200			Transcription elongation facto...		Lus10009128 [exp]	8.5	0.7898
AT5G61400			Pentatricopeptide repeat (PPR)...		Lus10019080 [exp]	11.1	0.7897
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10033962 [exp]	15.8	0.7466
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10027521 [exp]	19.3	0.7382
AT1G11050			Protein kinase superfamily pro...		Lus10029711 [exp]	19.6	0.6532
AT5G11430			SPOC domain / Transcription el...		Lus10013146 [exp]	20.1	0.7861
AT5G40400			Pentatricopeptide repeat (PPR)...		Lus10013077 [exp]	20.6	0.6763
AT5G50210		SUFE3, OLD5, QS	SULFUR E 3, ONSET OF LEAF DEAT...		Lus10019464 [exp]	28.6	0.6814

Compare expression of checked genes

Lus10016911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.