Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49470 758 / 0 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT3G06620 748 / 0 PAS domain-containing protein tyrosine kinase family protein (.1) AT1G67890 738 / 0 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT3G06640 686 / 0 PAS domain-containing protein tyrosine kinase family protein (.1) AT3G06630 650 / 0 protein kinase family protein (.1) AT4G23050 361 / 5e-114 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT5G11850 359 / 6e-112 Protein kinase superfamily protein (.1) AT1G08720 353 / 3e-109 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT1G73660 350 / 3e-107 protein tyrosine kinase family protein (.1) AT1G18160 345 / 2e-105 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037772 [exp] 1206 / 0 AT3G06620 919 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1) Lus10040540 [exp] 812 / 0 AT3G06620 858 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1) Lus10017844 [exp] 377 / 8e-120 AT4G23050 520 / 4e-175 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10024502 [exp] 376 / 1e-119 AT4G23050 579 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10027247 [exp] 357 / 3e-110 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1) Lus10000937 [exp] 354 / 3e-110 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10004124 [exp] 354 / 4e-110 AT1G08720 948 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10031341 [exp] 352 / 1e-109 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10038955 [exp] 343 / 7e-105 AT1G18160 978 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G146000 [exp] 879 / 0 AT3G06620 953 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1) Potri.008G105100 [exp] 879 / 0 AT5G49470 948 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) Potri.003G122700 [exp] 389 / 4e-125 AT4G23050 606 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Potri.013G034800 [exp] 363 / 2e-112 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.005G047600 [exp] 362 / 4e-112 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.018G053800 [exp] 354 / 3e-109 AT5G11850 517 / 2e-169 Protein kinase superfamily protein (.1) Potri.006G229400 [exp] 353 / 7e-109 AT5G11850 520 / 2e-170 Protein kinase superfamily protein (.1) Potri.016G095750 [exp] 343 / 4e-106 AT5G03730 970 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.015G040100 [exp] 346 / 2e-105 AT1G73660 593 / 0.0 protein tyrosine kinase family protein (.1) Potri.006G115800 [exp] 339 / 8e-105 AT5G03730 957 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0183 [flax] [poplar] PAS_Fold PF00989 [flax] [poplar] PAS PAS fold
Representative CDS sequence Show only first row Show all	>Lus10016912 pacid=23179039 polypeptide=Lus10016912 locus=Lus10016912.g ID=Lus10016912.BGIv1.0 annot-version=v1.0 ATGGACACGCCGCCGACGGAGGAGCTCCTCCGGAAGATTCAGGAGCTGGAAGCTGGGCAAGCTGAGCTTCAGGAAGAGATGACCAGGCTTAGACTCACCT CCGATCCGAAATCGGATGATCTGCTCCCGCTGCACCACCACCATCACCATCATCATCACCATCCTCGCTCTCAGTCCATTTCTCCCCAGCGTCCAGGGAC TAGACGGACCTTCGAGTCTTCTTCGAGTATGAAGAAGACCTCGCCGCCGTTTAGGCATTCGTCTCCCTTGCAGAGAGAGTCTCGTCAGCTGGCCAGCGCC TCGGATAGAAGTAATGTCGGTGCGGAGGGCGGCAGCGGCAGCGGCAGCGGCAGTGGGGGTACTACTGGTCCGCCGGCTATCAAGTTTACGGATAGGCAGT ACTTGAATATATTGCAGTCTATGGGGCAGTCCATACATATCTTTGATGTTGATGGCCGTCTTATCTACTGGAATCGAACTGCTGAAAACCTTTTTGGTTA CACCGCGGCGGAAGCTCTTGGTCAGCCCGGTATTGATCTGTTGGTAGATCCCAGGGATCGAGCGATGGCGCATACTATTGTTAGCCGTAACAAAATGGGA GAGAGATGGACAGGACGGTTCCCTGTGAGGACTAAGCGGGGAGACAGGTTTTCGATTATGGCGACCAATACCCCCTTCTACGACGATGACGGTACTTTGA TTGGGGTTGTATCTGTCAGTAATGATGCACGAAACTTCGAAGAAGTAGCGGCTGAGATCTCTGATCCCAGACATTCAGAGGCAGAGTCAGCTACTAGTCG TGCTAGAAGTACTGTCACCAATAAACTTGGTCTAGACCCGCAGCAACCTCTGCAAATAGCAATTGCGTCTAAAATATCAAACCTGGCCTCTAAACAGGCA ACCAAGGTGAGCAACAAGGTCAAATCGAAAATTCGAACTGGAGAGAACAATATCGATCGTGAAGGTGGTAGTGGAGATAGCCATCATTCCGACCATGGCT ACTCAGATGCAGGAATCAATGACCACAGGGACGATGCGAACTCTAGCGGGGCTAGTACACCCCGGGCCGCCACACCGAGAGGAGTTTTTTGGCCATGGTT GCAGAATGATCAAGAGAATGAAACGAATCATCTGAAAAGTTCCTCTTATGGTACGAAGTTTGAAAGCCACTCAGGTGAAGGTCATAGGCATACTAGTAAC GAGCTTGGGTCTTGGTCATCGTCTGCGAATGTTAACAGCACAAGCAGTGTCAGTAGTTCCGGCAGCACTAGTAGTAGTGCTGTTAATAGGGTAGACTTAG AATCTGACTGCTTGGACTATGAGATACTGTGGGAGGACTTGACTATTGGAGAACAAATTGGACAAGGGTCTTGTGGGACAGTCTATCATGCCCTGTGGTA CGGATCAGATGTTGCCGTCAAGGTATTCTCCAAGCAAGAGTATTCTGAAGATGTGATATTTTCATTTAGACAAGAGGTATCTCTTATGAAAAGACTTCGC CATCCAAATGTGCTACTCTTTATGGGCGCCGTGACCTCACCTCAGCGTCTCTGCATCATTACAGAGTTCCTACCTCGGGGAAGTTTGTTCCGATTACTCC AAAGGAACACAACCAAACTAGATTGGAGACGTAGAGTTCACATGGCAATGGATATCGCTAGGGGTATGAACTATCTTCATCATTACAACCCACCCATCAT TCATCGTGACTTGAAGTCTTCAAATCTTCTTGTTGATAAAAATTGGACAGTGAAGGTTGGTGATTTTGGGCTATCACGTCTAAAGCATGAAACATATCTG ACAACTAAAACTGGGAAAGGCACGCCTCAATGGATGGCACCAGAAGTTCTCCGCAACGAACCGTCAGATGAGAAGTCTGACATCTACAGCTTCGGCGTAA TATTGTGGGAAATCGCAACAGAGAAAATCCCTTGGGATACTCTCAACTCCATGCAGGTAATTGGTGCTGTAGGCTTCATGAACCAACGGCTAGAAATACC AAAAGACGTGGATCCGCGTTGGGTCGCTATAATCGAGAGCTGCTGGCGCAGTGACCCAAGTACCCGTCCGTCGTTCCAAGAACTACTGGACAAGTTGAGA GACCTTCAGAGACAGTTAACGATTCAGTTACAAGCAGCGCGTTCTTCTGCTATCACCGCCGCCCGAAAGGAAAGCAACAAAGACGAGGAAGAGTGA
AA sequence Show only first row Show all	>Lus10016912 pacid=23179039 polypeptide=Lus10016912 locus=Lus10016912.g ID=Lus10016912.BGIv1.0 annot-version=v1.0 MDTPPTEELLRKIQELEAGQAELQEEMTRLRLTSDPKSDDLLPLHHHHHHHHHHPRSQSISPQRPGTRRTFESSSSMKKTSPPFRHSSPLQRESRQLASA SDRSNVGAEGGSGSGSGSGGTTGPPAIKFTDRQYLNILQSMGQSIHIFDVDGRLIYWNRTAENLFGYTAAEALGQPGIDLLVDPRDRAMAHTIVSRNKMG ERWTGRFPVRTKRGDRFSIMATNTPFYDDDGTLIGVVSVSNDARNFEEVAAEISDPRHSEAESATSRARSTVTNKLGLDPQQPLQIAIASKISNLASKQA TKVSNKVKSKIRTGENNIDREGGSGDSHHSDHGYSDAGINDHRDDANSSGASTPRAATPRGVFWPWLQNDQENETNHLKSSSYGTKFESHSGEGHRHTSN ELGSWSSSANVNSTSSVSSSGSTSSSAVNRVDLESDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSEDVIFSFRQEVSLMKRLR HPNVLLFMGAVTSPQRLCIITEFLPRGSLFRLLQRNTTKLDWRRRVHMAMDIARGMNYLHHYNPPIIHRDLKSSNLLVDKNWTVKVGDFGLSRLKHETYL TTKTGKGTPQWMAPEVLRNEPSDEKSDIYSFGVILWEIATEKIPWDTLNSMQVIGAVGFMNQRLEIPKDVDPRWVAIIESCWRSDPSTRPSFQELLDKLR DLQRQLTIQLQAARSSAITAARKESNKDEEE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67890			PAS domain-containing protein ...		Lus10016912 [exp]	0	1
AT5G19990		ATSUG1, RPT6A	regulatory particle triple-A A...		Lus10017762 [exp]	1.7	0.9027
AT1G20670			DNA-binding bromodomain-contai...		Lus10022999 [exp]	2.8	0.9010
AT1G73660			protein tyrosine kinase family...		Lus10031341 [exp]	5.5	0.8816
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10017923 [exp]	5.7	0.8650
AT1G68990		MGP3	male gametophyte defective 3 (...		Lus10036844 [exp]	7.7	0.8777
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Lus10025284 [exp]	10.6	0.8821
AT4G23740			Leucine-rich repeat protein ki...		Lus10039321 [exp]	15.5	0.8842
AT1G43710		EMB1075	embryo defective 1075, Pyridox...		Lus10028592 [exp]	17.8	0.8994
					Lus10003602 [exp]	18.3	0.8609
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10021478 [exp]	19.9	0.8940

Compare expression of checked genes

Lus10016912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.