Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16230 62 / 8e-13 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 61 / 3e-12 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G23540 56 / 3e-10 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G74460 52 / 3e-09 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G41890 52 / 5e-09 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G04290 43 / 6e-06 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) AT5G08460 43 / 6e-06 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G33370 42 / 9e-06 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G18430 41 / 4e-05 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 40 / 5e-05 SGNH hydrolase-type esterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037775 [exp] 118 / 3e-36 ND 43 / 5e-06 Lus10016918 [exp] 76 / 1e-17 AT2G23540 381 / 6e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005236 [exp] 71 / 8e-16 AT2G23540 390 / 1e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005238 [exp] 67 / 3e-14 AT2G23540 369 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10022471 [exp] 57 / 8e-11 AT2G23540 589 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016775 [exp] 57 / 1e-10 AT2G23540 592 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037776 [exp] 52 / 3e-09 AT4G16230 188 / 2e-59 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034459 [exp] 51 / 8e-09 AT1G74460 546 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10019095 [exp] 51 / 1e-08 AT1G74460 550 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G104600 [exp] 68 / 1e-14 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G104700 [exp] 54 / 7e-10 AT2G23540 280 / 1e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.012G068700 [exp] 50 / 3e-08 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G067600 [exp] 45 / 7e-07 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.017G130100 [exp] 44 / 3e-06 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.019G008300 [exp] 43 / 5e-06 AT1G29670 318 / 6e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G086700 [exp] 43 / 6e-06 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.019G024700 [exp] 42 / 9e-06 AT5G33370 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.011G076400 [exp] 42 / 1e-05 AT5G45670 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G253400 [exp] 42 / 1e-05 AT4G28780 558 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016916 pacid=23179116 polypeptide=Lus10016916 locus=Lus10016916.g ID=Lus10016916.BGIv1.0 annot-version=v1.0 ATGGGTGGCATTCCTAGCAGAGTCCTTGCCGTTCTTTTTCTGGGAATCTTGATAGCATTAAAAATCCGCATTGTCATCGATTTTGTAAATCCGACTGGTC GATATACCGGTGGAAGTACCATTGTTGATGTTATAGGTCATCAGGAAGTTGGTGTTGAAAGTTGTACTGATCATACCATAAGGCCTATAATACTTGAGGG AGTCAACTATGCTTCTGGTGCCGGAGGAGGAATTCTCAACGACACCGGCAAGATCTTTGTAAATTGGAGGAGTGTCAGAGTCGCGTTGAAGTAA
AA sequence Show only first row Show all	>Lus10016916 pacid=23179116 polypeptide=Lus10016916 locus=Lus10016916.g ID=Lus10016916.BGIv1.0 annot-version=v1.0 MGGIPSRVLAVLFLGILIALKIRIVIDFVNPTGRYTGGSTIVDVIGHQEVGVESCTDHTIRPIILEGVNYASGAGGGILNDTGKIFVNWRSVRVALK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16230			GDSL-like Lipase/Acylhydrolase...		Lus10016916 [exp]	0	1
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10030842 [exp]	11.1	0.9936
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10030843 [exp]	15.7	0.9934
					Lus10028932 [exp]	19.4	0.9929
AT1G72490			unknown protein		Lus10037689 [exp]	20.6	0.9810
AT1G04100	AUX_IAA	IAA10	indoleacetic acid-induced prot...		Lus10001501 [exp]	22.1	0.9929
AT4G35150			O-methyltransferase family pro...		Lus10033655 [exp]	23.2	0.9846
AT3G21720		ICL	isocitrate lyase (.1)		Lus10015122 [exp]	24.6	0.9928
AT5G54740		SESA5	seed storage albumin 5 (.1)		Lus10023513 [exp]	25.9	0.9851
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032263 [exp]	27.5	0.9928
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10036850 [exp]	28.7	0.9928

Compare expression of checked genes

Lus10016916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.