Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23540 380 / 2e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 358 / 2e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G16230 285 / 2e-95 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G41890 285 / 1e-93 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 263 / 3e-85 GLIP7 GDSL-motif lipase 7 (.1) AT1G29670 260 / 5e-84 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 260 / 7e-84 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 254 / 1e-81 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 251 / 3e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G71250 249 / 2e-79 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005236 [exp] 502 / 1e-178 AT2G23540 390 / 1e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005238 [exp] 489 / 1e-173 AT2G23540 369 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016775 [exp] 382 / 1e-131 AT2G23540 592 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10022471 [exp] 380 / 9e-131 AT2G23540 589 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037776 [exp] 318 / 2e-108 AT4G16230 188 / 2e-59 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10030684 [exp] 306 / 2e-102 AT2G23540 244 / 2e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 272 / 3e-88 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10001643 [exp] 265 / 1e-85 AT1G74460 530 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10021664 [exp] 262 / 2e-84 AT1G74460 526 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G104600 [exp] 479 / 7e-170 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.007G036300 [exp] 364 / 2e-124 AT2G23540 554 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G104700 [exp] 323 / 3e-108 AT2G23540 280 / 1e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G067600 [exp] 267 / 1e-86 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G216400 [exp] 262 / 2e-85 AT2G23540 240 / 1e-76 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076500 [exp] 258 / 3e-83 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102500 [exp] 258 / 6e-83 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.012G068700 [exp] 257 / 2e-82 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G086700 [exp] 256 / 2e-82 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G064500 [exp] 256 / 3e-82 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10016918 pacid=23179128 polypeptide=Lus10016918 locus=Lus10016918.g ID=Lus10016918.BGIv1.0 annot-version=v1.0 ATGGGTACTACTCTTCCCACCAGAGTCCTCACAGTTCTTCTTGTCTCAATCCTCATAGCATCAGCAATCCGCCTCGCCATCGGCGGCAGCTGCGACTGCA GTCCCAATGTAGTCAGCTTCGTATTCGGCGACTCGTTAGTCGATTCCGGAAACAACAACTACATCGTCTCCCTGTCGAAGGCCAACTACCTTCCGAACGG TGTCGATTTCGGAAAACCGACCGGGCGTTACACCAACGGAAGAACCATAGCTGACGTTATTGGCCAGCAAGTCGGCGTGGCAGGTTTCACTCTTCCGTAC TTGTCTCCTGATACCGTGGGGCCTATAATACTTCAGGGAGTCAACTATGCTTCTGGCGCCGGAGGCATTCTCAACGACACCGGCAAGATTTTTGGCGGCC GGATCAACTTGGACGCACAGATTGATAACTTTGCGGAAACGAAGAAGGAGATCATATCGATGATCGGTGTAGCGAAGGGAGGAAAGCTTTTGGAAACGGC GTTGTATTCCGTTACGATCGGATCGAACGACTTTGTGAACAACTACCTAACTCCTATCATATCGATTCCTGAGCAAGCTTCAACCCCTCCGGAGAAGTAC GTTGCCAAAATGATCGACAAGTTAACACTCCAACTTACTCGACTATATAGTTTGGGGGCCCGAAAGATCGTGGTGGTGAACGTGGGCCCAATTGGTTGCA TCCCGTACATGAGAGACGTGAACCCTTTGTCGGGGGACAAATGTGTTGAGTTCCCGAACAAGTTGGCTCGGTCTTACAACGCCAAGCTAAAGACGGTCGT TCAAGGACTCAGTAAATCATTGAAGGGATCGTATTTTGTCTACGCCGACGTTTACAGGATTGTGAATGACATAATCACCAACTATAAGTCCTATGGTTTT GTGAATGCAAACGGAGCGTGTTGTCATCTGGCGGGGAGGCACGGTGGGCTGATCCCTTGCGGTCCGTGGTCTAAAGTTTGTTCAGAGAGGTCAAAGTATG TTTTTTGGGATCCTTACCATCCGTCGGATGCGACAAATGTGATCATGGCCAAGCGTTTGTTGGATGGAGGCATTGACGACATTTGGCCCATGAATGTCCG TCAGCTAGTTGCAATTGGTTCGTCTGCTCTCAACCATACTAATGACATACCCGGTTGGGTCTTATAA
AA sequence Show only first row Show all	>Lus10016918 pacid=23179128 polypeptide=Lus10016918 locus=Lus10016918.g ID=Lus10016918.BGIv1.0 annot-version=v1.0 MGTTLPTRVLTVLLVSILIASAIRLAIGGSCDCSPNVVSFVFGDSLVDSGNNNYIVSLSKANYLPNGVDFGKPTGRYTNGRTIADVIGQQVGVAGFTLPY LSPDTVGPIILQGVNYASGAGGILNDTGKIFGGRINLDAQIDNFAETKKEIISMIGVAKGGKLLETALYSVTIGSNDFVNNYLTPIISIPEQASTPPEKY VAKMIDKLTLQLTRLYSLGARKIVVVNVGPIGCIPYMRDVNPLSGDKCVEFPNKLARSYNAKLKTVVQGLSKSLKGSYFVYADVYRIVNDIITNYKSYGF VNANGACCHLAGRHGGLIPCGPWSKVCSERSKYVFWDPYHPSDATNVIMAKRLLDGGIDDIWPMNVRQLVAIGSSALNHTNDIPGWVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10016918 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10021392 [exp]	1.7	0.8376
AT1G26820		RNS3	ribonuclease 3 (.1)		Lus10003110 [exp]	5.1	0.8036
AT3G01420		PADOX-1, ALPHA-...	plant alpha dioxygenase 1, alp...		Lus10039436 [exp]	9.9	0.7996
AT1G26820		RNS3	ribonuclease 3 (.1)		Lus10022385 [exp]	12.6	0.7661
					Lus10002102 [exp]	24.8	0.6532
AT4G38080			hydroxyproline-rich glycoprote...		Lus10029845 [exp]	31.2	0.6867
					Lus10032106 [exp]	32.9	0.6380
AT1G24420			HXXXD-type acyl-transferase fa...		Lus10025521 [exp]	39.0	0.6827
					Lus10033046 [exp]	39.7	0.6693
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10011883 [exp]	43.9	0.7661

Compare expression of checked genes

Lus10016918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.