Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16210 373 / 8e-132 ECHIA, E-COAH-2 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) AT1G60550 95 / 2e-22 ECHID, DHNS enoyl-CoA hydratase/isomerase D (.1) AT4G16800 94 / 3e-22 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT5G43280 83 / 6e-19 ATDCI1 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) AT2G30660 77 / 4e-16 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT3G06860 75 / 4e-15 ATMFP2, ATMPF2, MFP2 multifunctional protein 2 (.1) AT5G65940 74 / 5e-15 CHY1 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) AT4G29010 72 / 3e-14 AIM1 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) AT2G30650 70 / 2e-13 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT1G06550 59 / 8e-10 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037777 [exp] 411 / 6e-144 AT4G16210 360 / 1e-123 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Lus10016919 [exp] 197 / 5e-64 AT4G16210 206 / 1e-67 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Lus10013023 [exp] 92 / 1e-21 AT1G60550 514 / 0.0 enoyl-CoA hydratase/isomerase D (.1) Lus10029142 [exp] 91 / 6e-21 AT1G60550 512 / 0.0 enoyl-CoA hydratase/isomerase D (.1) Lus10006501 [exp] 90 / 1e-20 AT3G06860 504 / 4e-175 multifunctional protein 2 (.1) Lus10037495 [exp] 91 / 2e-20 AT3G06860 1170 / 0.0 multifunctional protein 2 (.1) Lus10011336 [exp] 87 / 5e-20 AT5G43280 404 / 8e-144 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Lus10002583 [exp] 82 / 4e-18 AT5G43280 399 / 1e-141 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Lus10043224 [exp] 73 / 3e-14 AT4G29010 1063 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G146400 [exp] 406 / 1e-144 AT4G16210 418 / 2e-149 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Potri.008G104500 [exp] 404 / 8e-144 AT4G16210 422 / 3e-151 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Potri.001G153300 [exp] 102 / 1e-25 AT4G16800 346 / 8e-120 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.001G329900 [exp] 91 / 3e-21 AT1G60550 550 / 0.0 enoyl-CoA hydratase/isomerase D (.1) Potri.010G011900 [exp] 92 / 1e-20 AT3G06860 1154 / 0.0 multifunctional protein 2 (.1) Potri.001G061000 [exp] 89 / 1e-20 AT5G43280 379 / 1e-133 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Potri.008G220400 [exp] 91 / 2e-20 AT3G06860 1161 / 0.0 multifunctional protein 2 (.1) Potri.018G082900 [exp] 74 / 9e-15 AT4G29010 1094 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Potri.014G179000 [exp] 73 / 2e-14 AT5G65940 556 / 0.0 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.003G080800 [exp] 68 / 3e-13 AT4G16800 266 / 7e-89 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00378 [flax] [poplar] ECH_1 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Lus10016920 pacid=23179093 polypeptide=Lus10016920 locus=Lus10016920.g ID=Lus10016920.BGIv1.0 annot-version=v1.0 ATGGATCCGTCGACGGATCTAGTCTTGGTAACCCGAGACCCGAACGGCGTAGCCACCGTCACCATCAACCGTCCCAAATCGCTGAATTCCCTTACCAGAG CCGTAATTGTCCGACTCGCTTGGGAGTTCAGCGCCCTGGCCTGCGACGAATCGATCAAGGTAATCATCTTGACCGGCTCGGGGCGATCGTTCTGCTCCGG CGTCGATCTCATGGCTGCGGCGGACGTTTTCAAAGGCGACGTCAAGGATGTCCAGACCGACGTGGTCGTTCAGATGGAGCTGTGCAAGAAGCCTATAATC GGAGCGATTAACGGATTTGCGATCACCGCCGGGTTCGAGATCGCTCTCGCCTGCGATATATTGATCGCTGTTAGAGGAGCTATATTCATTGACACCCACG CCAGGTTTGGGATATTTCCTTCATGGGGTCTTTCCCAGAAGCTGTCGAGGCTAATAGGGGTTAACAAAGCTCGGGAAGCGTCCTTGACAGCGGGGCCAAT AACTGCGGAGCAGGCTGAGAAATGGGGGCTGGTGAATCACCTTGTGGAAGAAGGAGAATCGCTACAGAAAGCACATGAAGTGGGGGGAGCCATATTAAAG AACAATCAGGACTTGGTGTTGAGGTACAAAGCCGTGATCAACGACGGGATTAAACTGGATTTGGGTTCTGCTCTTTCTCTTGAGAAGGAAAGGGCGCATA AGTACTACGATGGGATGACAAAGGAGCAATTCAAGAAGATGCAGGAGTTCATAGCTGGCCGTGGCTCGAAGAAGCCTTCTTCTAAGTTGTAA
AA sequence Show only first row Show all	>Lus10016920 pacid=23179093 polypeptide=Lus10016920 locus=Lus10016920.g ID=Lus10016920.BGIv1.0 annot-version=v1.0 MDPSTDLVLVTRDPNGVATVTINRPKSLNSLTRAVIVRLAWEFSALACDESIKVIILTGSGRSFCSGVDLMAAADVFKGDVKDVQTDVVVQMELCKKPII GAINGFAITAGFEIALACDILIAVRGAIFIDTHARFGIFPSWGLSQKLSRLIGVNKAREASLTAGPITAEQAEKWGLVNHLVEEGESLQKAHEVGGAILK NNQDLVLRYKAVINDGIKLDLGSALSLEKERAHKYYDGMTKEQFKKMQEFIAGRGSKKPSSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10016920 [exp]	0	1
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10016919 [exp]	1.0	0.9569
AT3G25160			ER lumen protein retaining rec...		Lus10003146 [exp]	1.4	0.9497
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009658 [exp]	6.0	0.9347
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Lus10000311 [exp]	6.6	0.9177
AT2G17990			unknown protein		Lus10041920 [exp]	7.7	0.9179
AT2G19460			Protein of unknown function (D...		Lus10027629 [exp]	8.5	0.9182
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10036486 [exp]	10.0	0.9262
AT4G27880			Protein with RING/U-box and TR...		Lus10022405 [exp]	10.4	0.9097
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10010293 [exp]	11.1	0.8981
AT1G12440			A20/AN1-like zinc finger famil...		Lus10028903 [exp]	11.3	0.9194

Compare expression of checked genes

Lus10016920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.