Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16920 234 / 5e-70 UBC23 ,PFU2 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) AT1G53023 219 / 1e-69 Ubiquitin-conjugating enzyme family protein (.1) AT3G15355 224 / 1e-68 UBC25 ,PFU1 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) AT1G53025 221 / 5e-68 Ubiquitin-conjugating enzyme family protein (.1) AT2G33770 211 / 3e-62 ATUBC24, UBC24, PHO2 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) AT5G41700 72 / 3e-15 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT4G27960 71 / 6e-15 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT1G64230 71 / 7e-15 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT5G53300 70 / 1e-14 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT2G16740 67 / 3e-13 UBC29 ubiquitin-conjugating enzyme 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037778 [exp] 507 / 0 AT2G16920 256 / 9e-81 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10040748 [exp] 338 / 6e-116 AT2G16920 244 / 1e-72 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10028151 [exp] 235 / 1e-73 AT1G53025 388 / 2e-129 Ubiquitin-conjugating enzyme family protein (.1) Lus10034472 [exp] 239 / 8e-73 AT2G16920 907 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10001214 [exp] 231 / 1e-71 AT2G33770 508 / 9e-171 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Lus10025070 [exp] 237 / 4e-71 AT2G16920 1209 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10018596 [exp] 225 / 2e-70 AT3G15355 339 / 3e-111 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Lus10005854 [exp] 229 / 8e-69 AT2G33770 785 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Lus10042852 [exp] 219 / 8e-68 AT1G53025 318 / 5e-103 Ubiquitin-conjugating enzyme family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G146500 [exp] 326 / 3e-111 AT2G33770 255 / 3e-77 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.008G104400 [exp] 324 / 5e-110 AT3G15355 267 / 7e-84 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.004G043500 [exp] 244 / 4e-74 AT2G33770 823 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.011G118800 [exp] 236 / 6e-73 AT3G15355 411 / 1e-135 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.013G130800 [exp] 229 / 2e-71 AT3G15355 334 / 1e-107 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.001G400300 [exp] 231 / 4e-71 AT3G15355 383 / 5e-125 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.011G052600 [exp] 232 / 1e-69 AT2G33770 796 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.004G176000 [exp] 231 / 1e-68 AT2G16920 1045 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Potri.009G136000 [exp] 223 / 5e-66 AT2G16920 1069 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Potri.013G108500 [exp] 150 / 6e-43 AT2G16920 152 / 9e-41 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10016921 pacid=23179031 polypeptide=Lus10016921 locus=Lus10016921.g ID=Lus10016921.BGIv1.0 annot-version=v1.0 ATGCAAGAATGGAAGATCCTCGGAAAGCACCTCCCAGATTCCATATCCGTACGGGTCTACGAGGACCAGATTGACATCCTCCGCGCCGTCATCGTTGGCG CCGCGGGAACTCCTTACCACGACGGTCTATACTTCTTCGACATTGCCTTCCCAACCGATTACCCCAAATCCCCTCCCAAAGTCATGTACAGGTCGTCCGG GCTTCGGATCAACCCGAATCTCTACGCCAACGGCCGGGTCTGCCTCAGCCTGATCAACACGTGGAGCGGGAAGCGGGTCGAGAATAAGCGGGCCGAGAAG TGGAACCCGGCCGAATCGACGATTCTCCAGGTGCTGCTCTCGATCCAGGGTCTGGTCTTGAACGAGAGGCCTTATTTCAACGAGCCGGGGGCGGGGATGT TTCCAGGGAAGAAGGATCGGAGGTCGATGGCGTATAATGAGGATGTTTTTGTTCTCTGCTGCAAGACGATGCTGTTCTTGATGAGAAATCCGCCGAGGAA TTTCGAAGGTTTTGTACGGTCGCATTTCAAGGAGAGGGCGGTTGCGATTCTTTCGGCGATGCGTGCTTATGCGGATGGGGAGTGTAGGATCGGGTATTAC GGGACGGATGAAGGGGCGAATTCGTTGCCGGTGAAAGGTGAGCCGTCGGCGAAATTCAAGGGGTGGATTACGCAGCTGCAGTTGGAGCTGAGTGCTGCTT TCATGAAAGTAGATGCGCCTGTTGGGAATTTCGTCGAACAGCTGGAGAGCGAGAAGGCGGCGAGGCTGAAGAAGACGAAGAAGCAGGAGAAGGGGTCGGA GAAGAAGAGTGGGGTGGTGAAGAGGCTTTTGGGGAAAGCAAAGGAGATTCTGGGATTGAAGAAGAAGAAGACGACGACGACGACAACTGGAGGGACCCCA TAG
AA sequence Show only first row Show all	>Lus10016921 pacid=23179031 polypeptide=Lus10016921 locus=Lus10016921.g ID=Lus10016921.BGIv1.0 annot-version=v1.0 MQEWKILGKHLPDSISVRVYEDQIDILRAVIVGAAGTPYHDGLYFFDIAFPTDYPKSPPKVMYRSSGLRINPNLYANGRVCLSLINTWSGKRVENKRAEK WNPAESTILQVLLSIQGLVLNERPYFNEPGAGMFPGKKDRRSMAYNEDVFVLCCKTMLFLMRNPPRNFEGFVRSHFKERAVAILSAMRAYADGECRIGYY GTDEGANSLPVKGEPSAKFKGWITQLQLELSAAFMKVDAPVGNFVEQLESEKAARLKKTKKQEKGSEKKSGVVKRLLGKAKEILGLKKKKTTTTTTGGTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10016921 [exp]	0	1
AT3G04090		SIP1A, SIP1;1	small and basic intrinsic prot...		Lus10030046 [exp]	2.2	0.9131
AT1G30480		DRT111	DNA-DAMAGE-REPAIR/TOLERATION P...		Lus10023355 [exp]	4.2	0.8756
AT5G52810			NAD(P)-binding Rossmann-fold s...		Lus10027529 [exp]	4.2	0.8674
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10014747 [exp]	5.5	0.8622
AT5G58470		TAF15b	TBP-associated factor 15B (.1....		Lus10026388 [exp]	6.7	0.8627
AT1G16210			unknown protein		Lus10012520 [exp]	10.2	0.8546
AT1G08700		PS1	Presenilin-1 (.1)		Lus10020339 [exp]	14.5	0.8539
AT1G08480		SDH6	succinate dehydrogenase 6, unk...		Lus10013373 [exp]	14.8	0.8567
					Lus10031351 [exp]	14.8	0.8417
AT1G14450			NADH dehydrogenase (ubiquinone...		Lus10038124 [exp]	19.1	0.8119

Compare expression of checked genes

Lus10016921 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.