Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043034 [exp] 282 / 5e-94 AT5G27420 52 / 2e-07 carbon/nitrogen insensitive 1 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10016924 pacid=23159607 polypeptide=Lus10016924 locus=Lus10016924.g ID=Lus10016924.BGIv1.0 annot-version=v1.0 ATGGCGGCCGCTGAACCAACGGCGACGCACATGGACGAAGACTACGAGACATTGGTGACTCTACTCCCAAGCATGCCACCGTCTTCTACAATTCTAGAGC AACCAGATTCAGACAGCTCCACGATAATAATACTGTTGGAGGGGAAGTTCGAACGCATCTATGAAAGCCGGAACACCCCGCCTGTGTCCTCCCCCCACGA CCCTACACGAATATTCTTGTCGGAGCACAGATCATCGGACACGCCGCCCAGACAGTTAGTAGAGCAATCCACCGGCGCAAAAATCAGAATCCCCGCTGAC AAGGAGTCAATGTACAACATCTTTTCCACAATGAACATTCCTCTCCGGTTCGAAAACAAGAAGACGATCTACTGGAGGAAGAGCAGCAACAAATGGGATC CAATAGTGGAGGGCAGAGAGGGGTTGGTGTCCCGAATCGTGGAGGCTCTGCTGCGATTTGTGGAAGATCGTGAGAATGGAAAGAATCGATGGCCGTCGTC GGTAGAGGTGAAGGTGCATTTGAAGATTGAGGAGAGGATCAGAGTAACGGAGGAGGATTATCGAAGGATGTGGAAGGCGAAAAGAGAAGGGGAGATGGTG GAGGGTTTGGAGAAGATGTTGATTCGGCATCAGGAGATGATGGTGAATAATAAAAAGGTGGAGGTGGATCTCAAGAGAGTGGCTATGATGGAGATAGAGC ATAGATATGGAACAATAACAAGTATGCATCTGATTCAGAGTGGTGCTATTGATGCGATTGCTAGGAGAGCATACGAGGCGTGGGACAAGATTATGTTGTC CAAAATCAAGAGGGCTCTTCTTGTTATGGTTGTGAACAAGGAAGAAGAAGAAGAAGACGCAAAAAGTAGGGAGGATTGCAGCATCTGCTTAGGACCCAAA TGCTATGAGGAGGATGTTGTGATTCTTCAATTCAGTAAATGTGGTCACTCGTTCCACGAGCGATGCCTCCTCCTCTGGCTCAAGAAAACCACCACTTGCC CTTTGTGTCGCTTCCCTCTTTTCTAG
AA sequence Show only first row Show all	>Lus10016924 pacid=23159607 polypeptide=Lus10016924 locus=Lus10016924.g ID=Lus10016924.BGIv1.0 annot-version=v1.0 MAAAEPTATHMDEDYETLVTLLPSMPPSSTILEQPDSDSSTIIILLEGKFERIYESRNTPPVSSPHDPTRIFLSEHRSSDTPPRQLVEQSTGAKIRIPAD KESMYNIFSTMNIPLRFENKKTIYWRKSSNKWDPIVEGREGLVSRIVEALLRFVEDRENGKNRWPSSVEVKVHLKIEERIRVTEEDYRRMWKAKREGEMV EGLEKMLIRHQEMMVNNKKVEVDLKRVAMMEIEHRYGTITSMHLIQSGAIDAIARRAYEAWDKIMLSKIKRALLVMVVNKEEEEEDAKSREDCSICLGPK CYEEDVVILQFSKCGHSFHERCLLLWLKKTTTCPLCRFPLF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10160			RING/U-box superfamily protein...		Lus10016924 [exp]	0	1
					Lus10002304 [exp]	2.0	0.9071
					Lus10030151 [exp]	5.5	0.8920
AT3G14610		CYP72A7	"cytochrome P450, family 72, s...		Lus10025006 [exp]	6.0	0.8973
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10037377 [exp]	6.0	0.9039
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10028848 [exp]	8.3	0.8996
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10042875 [exp]	12.6	0.8506
AT3G27440		UKL5	uridine kinase-like 5 (.1)		Lus10022289 [exp]	12.7	0.8776
AT2G37370			unknown protein		Lus10025285 [exp]	13.9	0.8535
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Lus10028695 [exp]	14.5	0.8783
AT1G79450		ALIS5	ALA-interacting subunit 5 (.1....		Lus10033283 [exp]	15.3	0.8702

Compare expression of checked genes

Lus10016924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.