Plant FIBer expression Database

Lus10016926 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G72090 749 / 0 Methylthiotransferase (.1)
AT4G36390 103 / 7e-23 Methylthiotransferase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008262
[exp]
809 / 0 AT1G72090 658 / 0.0 Methylthiotransferase (.1)
Lus10041793
[exp]
117 / 3e-27 AT4G36390 913 / 0.0 Methylthiotransferase (.1)
Lus10028344
[exp]
116 / 5e-27 AT4G36390 908 / 0.0 Methylthiotransferase (.1)
Lus10008261
[exp]
71 / 8e-15 AT1G72090 74 / 8e-17 Methylthiotransferase (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G107800
[exp]
815 / 0 AT1G72090 847 / 0.0 Methylthiotransferase (.1)
Potri.007G018500
[exp]
109 / 7e-25 AT4G36390 864 / 0.0 Methylthiotransferase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0036 TIM_barrel PF04055 Radical_SAM Radical SAM superfamily
CL0304 CheY PF00919 UPF0004 Uncharacterized protein family UPF0004
Representative CDS sequence
>Lus10016926 pacid=23159604 polypeptide=Lus10016926 locus=Lus10016926.g ID=Lus10016926.BGIv1.0 annot-version=v1.0
ATGGAAGACATCGAGGACTTGTTAATCGGCGGAGGCGGCGGAACTCCTCCCGGGTTCCGGTTACCAATTAACGCGGTTGGAGTAAAGCCCAGGAAGAATG
ACAAGAATGGAGCTCAACTCAATGGCAGCTCGCTCTCTGGATCGTCTCTCTTTTCTCAAGTTCCTGGAACTCAGAGCGACAGTGAATATATGGCTGGTCA
GCTTTCATCCTTCGGTTATGCTTTAAGTGATGATCCTGACAAAGCACATCTATGGCTGATCAACACATGCACCGTAAAAGCCCCGAGTCAGTCTGCCATG
GACACTCTTATAGCAAAGGGTAAAAGTGCAAAAAAGCCCCTAGTTGTAGCTGGTTGTGTACCCCAGGGAAGTCGGAATTTGAAAGAGTTGGATGGAGTCA
GTATAGTTGGAGTCCAGCAGATAGATCGTGTGGTTGAAGTAGTAGAGGAGACCCTAAAGGGGCATGAGGTTCGGATTTTAACTCGCAAGACATTGCCAGC
ACTTGATCTCCCAAAGGTCAGAAAAAATAAGTTTGTCGAGATTCTTCCAATTAATGTTGGCTGTTTGGGAGCCTGCACTTATTGCAAGACAAAGCATGCC
CGTGGTCATTTGGGAAGCTATACCATTGACGGCCTGGTAGGGCGTGTGAAAGCAGTTATAGATGAGGGAGTGAAGGAAATATGGTTGAGCAGTGAGGACA
CTGGTGCATATGGTCGTGACATTGGTGTTAATCTTCCTACTTTGTTGAATGGCATTGTCGCTGAACTTCCTTCTGATGCAAGCACAATGCTGCGAATTGG
GATGACAAATCCGCCCTTTATTCTTGAGCACTTAGATCAGATTGCAGAAGTTTTGCGTCATCCATGTGTGTACTCGTTTCTTCATGTCCCTGTACAGTCT
GGAAGTGATGCTGTCCTGAGTGCAATGAACCGAGAATATACTGTTAGTGATTTCAGAACAGTGGTAGATACGTTAACTGAGAAAGTTCCTGGGATGCATA
TTGCTACTGATATCATATGCGGATTTCCTGGTGAAACAGATGAAGATTTTGCTCAAACCGTAAGCCTCATTGAGGACTACAAGTTGTCTCAAGTTCATAT
TTCACAATTCTATCCTCGACCAGGTGGAACTCCGGCGGCCAGAATGAAGAAGGTCCCGAGTAACATAGTGAAGAAGCGGAGTCGTGAATTGACTGGTGTT
TTTGAAGCTTTCACACCATACAATGGAATGGAAGGGAGAATTGAAAGAGTCTGGATAACCGACATAGCTACTGACAGAGTTCACTTGGTGGGTCACACAA
AAGCGTACGTACAAGTACTCATAGTTGCTCCAGAAAGCATGCTTGGCAGTTCAGCTATGGTTAAGGTAACATCAGTTGGAAGGTGGTCTGTTTTTGGAGA
AGTAATCGAAATAGTCACTGAAGCAGACAACAGAAGAATTAGCAGTGAAACAAGGAAAGAAGTGAAGTGTGTTGATGAAGGAGAGAGTTGTGCATGTTCA
GGGGAAGAGGCAGCAGCAGCAGCAGCTTGTGCTTGTGGACCAGAGGGTTGCATAGAAGAGAAAGGTAACACTGTTTCATGTAATAATAATAATAATGCAC
CACTGCTGGTTGGAGGAGGGTTATCATTGAGGAAACTGAAAGCCAATGGCACAAGAAAGATGGTGGATGACATGACAAGTGATTTATTAGGAGGCAGCAG
CGTTAAGGAAGAAGAAGAGAAGGGTGAATGGGGTTTGGTAGATAGGGTTTTCCTAGGAGGATTGATTGTGAGCTTATTCACAGTTATAGCTCTCCTCTTA
CATCTTGGGTTTAGGATGATAGTATCCAAGTAA
AA sequence
>Lus10016926 pacid=23159604 polypeptide=Lus10016926 locus=Lus10016926.g ID=Lus10016926.BGIv1.0 annot-version=v1.0
MEDIEDLLIGGGGGTPPGFRLPINAVGVKPRKNDKNGAQLNGSSLSGSSLFSQVPGTQSDSEYMAGQLSSFGYALSDDPDKAHLWLINTCTVKAPSQSAM
DTLIAKGKSAKKPLVVAGCVPQGSRNLKELDGVSIVGVQQIDRVVEVVEETLKGHEVRILTRKTLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHA
RGHLGSYTIDGLVGRVKAVIDEGVKEIWLSSEDTGAYGRDIGVNLPTLLNGIVAELPSDASTMLRIGMTNPPFILEHLDQIAEVLRHPCVYSFLHVPVQS
GSDAVLSAMNREYTVSDFRTVVDTLTEKVPGMHIATDIICGFPGETDEDFAQTVSLIEDYKLSQVHISQFYPRPGGTPAARMKKVPSNIVKKRSRELTGV
FEAFTPYNGMEGRIERVWITDIATDRVHLVGHTKAYVQVLIVAPESMLGSSAMVKVTSVGRWSVFGEVIEIVTEADNRRISSETRKEVKCVDEGESCACS
GEEAAAAAACACGPEGCIEEKGNTVSCNNNNNAPLLVGGGLSLRKLKANGTRKMVDDMTSDLLGGSSVKEEEEKGEWGLVDRVFLGGLIVSLFTVIALLL
HLGFRMIVSK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G72090 Methylthiotransferase (.1) Lus10016926
[exp]
0 1
AT1G50910 unknown protein Lus10011153
[exp]
3.7 0.8168
AT1G60080 3'-5'-exoribonuclease family p... Lus10034605
[exp]
4.6 0.8238
AT4G18470 SNI1 SUPPRESSOR OF NPR1-1, INDUCIBL... Lus10025429
[exp]
4.9 0.8422
AT4G28450 nucleotide binding;protein bin... Lus10037378
[exp]
6.2 0.8168
AT4G01270 RING/U-box superfamily protein... Lus10005126
[exp]
6.7 0.8364
AT1G20693 HMGBETA1, NFD2,... NUCLEOSOME/CHROMATIN ASSEMBLY ... Lus10035991
[exp]
11.8 0.8425
AT1G15460 ATBOR4 ARABIDOPSIS THALIANA REQUIRES ... Lus10019443
[exp]
12.8 0.8409
AT3G57050 CBL cystathionine beta-lyase (.1.2... Lus10027313
[exp]
14.0 0.7961
AT5G26680 5'-3' exonuclease family prote... Lus10000270
[exp]
14.5 0.8201
AT1G20693 HMGBETA1, NFD2,... NUCLEOSOME/CHROMATIN ASSEMBLY ... Lus10016695
[exp]
15.1 0.8387

Lus10016926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.