Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31200 570 / 0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008260 [exp] 981 / 0 AT4G31200 586 / 0.0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3) Lus10009612 [exp] 52 / 1e-06 AT5G23080 835 / 0.0 TOUGH, SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2) Lus10000866 [exp] 52 / 1e-06 AT5G23080 829 / 0.0 TOUGH, SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2) Lus10025704 [exp] 42 / 0.001 AT1G14650 346 / 4e-114 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G002000 [exp] 683 / 0 AT4G31200 620 / 0.0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3) Potri.006G279800 [exp] 664 / 0 AT4G31200 579 / 0.0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3) Potri.012G058100 [exp] 52 / 2e-06 AT5G23080 837 / 0.0 TOUGH, SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01805 [flax] [poplar] Surp Surp module
Representative CDS sequence Show only first row Show all	>Lus10016927 pacid=23159615 polypeptide=Lus10016927 locus=Lus10016927.g ID=Lus10016927.BGIv1.0 annot-version=v1.0 ATGCAACAGTTTCCTTACCCTCATCCCCATTTGCAGCAGCAGCAGCAACCTCAGCTCCACGGCCATCCCCATCCAGCTCCACACCCTCATCTTCATCATC AGCAGCAGCCTCTCCCTGGTTTCTCTGCTCATTTACCTCCACCAATACTTCCTTCTCCGTTCCATGCCCCATCTGATTCCGCTCCATCACCACCAGCTCC TCCTCCCTCTGATCCTGAACTCCAGAAGCGAATTGACAAGCTTGTCGAGTACTCCGCTAAGAATGGCCCTGAATTCGAGCTGATGATCCGGGAAAAACAG CAGGATAATCCTGCTTATGGTTTTCTTTTTGGGGGTGATGGCCATAATTATTACCGCTATAAGCTTTGGCTATCTACTCGGCCTCAAGCTGGACCATACA ACTCTCCTTTCCCGCCCTCGTCTGCTGTTCCGTTAATGCATCCTCTTCCAAATGCTATGATGAATCCTGCTGTGGGGATGCAACCTCCATTTCAGCCTTT CTATGATCCACACCAGCATCACCGCCAGTCACTTCAACCCTTTGGGGCACACAGAGCAGATTTCGATCCATCTTCCAAGCCCTTCAAAGGTCTTTCTGGT CCACTTCCACCTGATGTTGTCGTTGAGTTGACCAACGTGCTTAACAGTCTCAATGGCACTAAGGATTCTATTAAGGGGTCTAAACTTTGGTTCATGCAGA GGTCCTCTCCTTTTGCACCTGCTCTGGCTGAGGCTTTAAGAGATAGGGTATTTTCCGTGGATGACCCAGAGAGACAGCTGCATATCATCTATCTTGCGAA TGACATCCTTTTTGATAGTTTGCAGCGAAGGGCTAATCCTCATGAGCCTGATAATGAGGCCCTTGCATTCAAGTTAGTCCTTGGTTCCATGCTTTCGAGG ATTTTCCAAAACCCACAGAATAAGGAGGAGAACCAGTCACGGTTACAGAAAATCCTGCAGTTCTGGGGCGCCAAGGAAGTCTTTGATCAAGATACTATTC ATGTACTGGAGAGTGAGATGATTTGCGGAGCACAGACAGGCTCGATTTTAGGATCTGCAAGGGACTTATCTGATTCAGTGACTGCTGCAGGATTCGCACA GCCACCAACGAACCACAGTACTTCACACTGGCAGCAGGATAAACAACTTGACAGAGAGCATGCTGATAAACAAGTCCCAACGGCAATGCCACTGTTGCCA CCTCAGCAATTTGTTGCAAATCCACTCCCTGCCAGTGGTTTTGCTGGTCATGTACCAGTAATGGCTGCTACTCAACCAGCTGGTCAACATGTATCTCACC TGTTGCAAACTCCCACACCGAGCATCACCGAAAAGTTGCCTCCGTATCCTTTATTCCCACCAGGTCTCATTCCAGGAATGGTTCGAAAAATGCAGATCGG AAGTGGGGTTCCGTACTCCCCTCTGAGTCCTTTTGATATTCCTACAATCATACCACCATCTAACGTATCACCATCAGAGGTTCTTGAAAGAGTGTCAAAG TTCTTTAATGAGATTGGAGAGGTAAACCCATCAGAAGGGCCAATGAAAGGGTCAGGTTCGCAGGATGAAGATTATGACTATGATTATGAAAGAGAGCGCT CTCCTGTTCGCAAAGGTGGAACATGTATCCCTCCACCTCCTAACTTGCAAGTCGACCCTAAAACAGGGACTTATGCTGATGGAAGTGTGGAGCGGAAACC AGGATCGGTAGCTTCTGGAAGGCTCGGGCTGGGAGCAACTGCGGACCCTAATGAATCTAGCCAATACGATGATGTATACACATCTTACAGGAAAGAAAGA AGCACAAACTACCATACTTCCATGAGTGCAAAAGCAGCCGCAAGGTAA
AA sequence Show only first row Show all	>Lus10016927 pacid=23159615 polypeptide=Lus10016927 locus=Lus10016927.g ID=Lus10016927.BGIv1.0 annot-version=v1.0 MQQFPYPHPHLQQQQQPQLHGHPHPAPHPHLHHQQQPLPGFSAHLPPPILPSPFHAPSDSAPSPPAPPPSDPELQKRIDKLVEYSAKNGPEFELMIREKQ QDNPAYGFLFGGDGHNYYRYKLWLSTRPQAGPYNSPFPPSSAVPLMHPLPNAMMNPAVGMQPPFQPFYDPHQHHRQSLQPFGAHRADFDPSSKPFKGLSG PLPPDVVVELTNVLNSLNGTKDSIKGSKLWFMQRSSPFAPALAEALRDRVFSVDDPERQLHIIYLANDILFDSLQRRANPHEPDNEALAFKLVLGSMLSR IFQNPQNKEENQSRLQKILQFWGAKEVFDQDTIHVLESEMICGAQTGSILGSARDLSDSVTAAGFAQPPTNHSTSHWQQDKQLDREHADKQVPTAMPLLP PQQFVANPLPASGFAGHVPVMAATQPAGQHVSHLLQTPTPSITEKLPPYPLFPPGLIPGMVRKMQIGSGVPYSPLSPFDIPTIIPPSNVSPSEVLERVSK FFNEIGEVNPSEGPMKGSGSQDEDYDYDYERERSPVRKGGTCIPPPPNLQVDPKTGTYADGSVERKPGSVASGRLGLGATADPNESSQYDDVYTSYRKER STNYHTSMSAKAAAR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31200			SWAP (Suppressor-of-White-APri...		Lus10016927 [exp]	0	1
AT1G10580			Transducin/WD40 repeat-like su...		Lus10030620 [exp]	2.0	0.9570
AT2G43770			Transducin/WD40 repeat-like su...		Lus10012230 [exp]	4.0	0.9444
AT1G76820			eukaryotic translation initiat...		Lus10012856 [exp]	4.2	0.9460
AT1G76810			eukaryotic translation initiat...		Lus10030500 [exp]	5.2	0.9448
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10037244 [exp]	5.8	0.9295
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Lus10034469 [exp]	8.1	0.9351
AT2G40800			unknown protein		Lus10012858 [exp]	8.9	0.9357
AT5G13780			Acyl-CoA N-acyltransferases (N...		Lus10016378 [exp]	10.2	0.9405
AT2G33730			P-loop containing nucleoside t...		Lus10015187 [exp]	11.5	0.9251
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10023565 [exp]	11.6	0.9435

Compare expression of checked genes

Lus10016927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.