Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72160 114 / 9e-30 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G22530 103 / 8e-26 PATL2 PATELLIN 2 (.1) AT4G09160 101 / 4e-25 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G72150 89 / 8e-21 PATL1 PATELLIN 1 (.1) AT1G30690 75 / 9e-16 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT3G51670 74 / 2e-15 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT4G08690 42 / 9e-05 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT5G63060 40 / 0.0005 Sec14p-like phosphatidylinositol transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009458 [exp] 110 / 1e-28 AT4G09160 275 / 2e-87 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10001542 [exp] 96 / 4e-23 AT1G72160 450 / 8e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10023378 [exp] 85 / 1e-19 AT1G30690 247 / 1e-77 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10038435 [exp] 84 / 8e-19 AT1G30690 513 / 2e-178 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10001269 [exp] 72 / 1e-14 AT3G51670 602 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10012219 [exp] 70 / 3e-14 AT3G51670 564 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10033895 [exp] 69 / 8e-14 AT1G30690 218 / 1e-62 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10003552 [exp] 69 / 1e-13 AT1G30690 290 / 4e-92 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10034529 [exp] 66 / 1e-13 AT1G04980 130 / 1e-36 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G105900 [exp] 122 / 1e-32 AT1G72160 574 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.019G079300 [exp] 122 / 2e-32 AT1G72160 545 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.019G079500 [exp] 110 / 5e-28 AT1G72160 439 / 1e-148 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.013G106000 [exp] 108 / 2e-27 AT1G72160 457 / 6e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.004G138200 [exp] 107 / 6e-27 AT1G72160 457 / 2e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011100 [exp] 102 / 3e-25 AT1G72160 454 / 6e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011101 [exp] 102 / 3e-25 AT1G72160 452 / 4e-154 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.016G127700 [exp] 84 / 4e-19 AT3G51670 641 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.001G461400 [exp] 78 / 9e-17 AT1G30690 497 / 4e-172 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G224800 [exp] 70 / 4e-14 AT1G30690 333 / 4e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10016928 pacid=23159626 polypeptide=Lus10016928 locus=Lus10016928.g ID=Lus10016928.BGIv1.0 annot-version=v1.0 ATGTCCGAACCTCAAAAAGATGAAGATCAAAGCTCGGATGTAAGTACAAAGATTAATGGTCCCACAGATGGAGTAGTTGAGAAAGTCGAAGAAGCTCCTC CGGCAAAGGCAGAGTATGTCGTCCCGGCTGCGACGGTGGAAGCAACATCTTCTTGGTTGTCGGAGGTTTCCATTTGGGGGATTCCACTGCTCAAGGACGA TAGAAGCGACGTGGTCTTGCTCAAATTCTTAAGAGCCATGGATTTTCAAGTGAAGGACGCTTTCGTAATGGTAAGGAAAACGATCCAGTGGAGGAAGGAA TTTAAAATCGACGAGCTAGTGGAGGAAGATCTTGGGGCCGATCTAGAAAAAGTCGTATTAGGAAAAGGGAACTTTTCTCCCTCATTTTCCCTCCAAGCAA ACACGCACCGTTTCACTAATCTGCTGCTACAAGGAAAGACGTTGCTGGAGCAACACGGTGCCATTCCAACCAAGAGGATAAGAACCTCTCTTCCTCCTGA GAAGCAAGCTGGCAATTCAGCTCCTGCACCTCCTGCACATTCAGTTATACGATTCCCAGCACTGCACCATTTACAGACAATTTGA
AA sequence Show only first row Show all	>Lus10016928 pacid=23159626 polypeptide=Lus10016928 locus=Lus10016928.g ID=Lus10016928.BGIv1.0 annot-version=v1.0 MSEPQKDEDQSSDVSTKINGPTDGVVEKVEEAPPAKAEYVVPAATVEATSSWLSEVSIWGIPLLKDDRSDVVLLKFLRAMDFQVKDAFVMVRKTIQWRKE FKIDELVEEDLGADLEKVVLGKGNFSPSFSLQANTHRFTNLLLQGKTLLEQHGAIPTKRIRTSLPPEKQAGNSAPAPPAHSVIRFPALHHLQTI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72160			Sec14p-like phosphatidylinosit...		Lus10016928 [exp]	0	1
AT5G15240			Transmembrane amino acid trans...		Lus10030469 [exp]	1.4	0.8729
AT5G44150			unknown protein		Lus10035461 [exp]	4.4	0.7764
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029390 [exp]	6.9	0.8635
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10029913 [exp]	8.5	0.8635
					Lus10000400 [exp]	9.8	0.8635
AT4G29280		LCR22	low-molecular-weight cysteine-...		Lus10015983 [exp]	11.0	0.8635
					Lus10009372 [exp]	12.0	0.8635
AT5G18460			Protein of Unknown Function (D...		Lus10006860 [exp]	13.0	0.8635
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Lus10026877 [exp]	13.9	0.8635
AT3G45600		TET3	tetraspanin3 (.1)		Lus10023218 [exp]	15.3	0.8561

Compare expression of checked genes

Lus10016928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.