Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71691 474 / 1e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G29670 347 / 9e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 341 / 1e-115 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 338 / 3e-114 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 337 / 5e-114 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G08460 336 / 3e-113 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 333 / 1e-112 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 326 / 1e-109 GLIP7 GDSL-motif lipase 7 (.1) AT1G29660 321 / 1e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 259 / 1e-83 SGNH hydrolase-type esterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001540 [exp] 481 / 9e-172 AT1G71691 393 / 2e-137 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10011997 [exp] 358 / 2e-122 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 352 / 1e-119 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 352 / 1e-119 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002777 [exp] 350 / 1e-118 AT5G45670 548 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 326 / 1e-109 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10039152 [exp] 325 / 5e-109 AT1G71250 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10000893 [exp] 318 / 2e-106 AT1G33811 504 / 3e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011996 [exp] 298 / 2e-98 AT1G29670 451 / 3e-159 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G076600 [exp] 545 / 0 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G102500 [exp] 541 / 0 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.011G076500 [exp] 356 / 1e-121 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G064500 [exp] 347 / 5e-118 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G067600 [exp] 332 / 6e-112 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102400 [exp] 320 / 2e-107 AT1G33811 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076400 [exp] 277 / 2e-90 AT5G45670 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G086700 [exp] 269 / 2e-87 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.017G130100 [exp] 264 / 1e-85 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.018G008100 [exp] 263 / 4e-85 AT1G29670 345 / 8e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10016929 pacid=23159622 polypeptide=Lus10016929 locus=Lus10016929.g ID=Lus10016929.BGIv1.0 annot-version=v1.0 ATGGTGGTCTCAATCTCAACTAAGAAACTGATCTTGTGTGTTGTGGTAATCTTGGGAGTGTTTTCCCAACTGGGCTTCGCTCAGTTTTTCAACGGGACTA TCGGCGATGACCATGGAGCAGGAGACGGCGGCGGCGAGGCTCCCGCCGCCGGGAGTGGGTCGCCTAAGGAAGCTATGGTGCCAGCATTGTTCATATTTGG GGACTCGTTGATAGACAACGGCAACAACAATGACTTGGCTTCTTTAGCCAAGGCCAACTATTTGCCTTATGGCATTGATTTCAACGGCGGTCCCACCGGT CGCTTCTCCAACGGCTACACCATGGTCGACGAAATCGCGGAGAGACTGGGACTCCCGTTGATTCCTCCGTATTCTCAAGTGTCCAGTGGCAACGGTGACG TCACTCACGGTGTCAACTACGCATCCGCCGCTGCCGGCATCCTCGACGACACCGGCCGAAACTTCGTGGGCCGGATCCCATTCGACGAACAAATACGAAA CTTCAGGAGCACTGTGGACCAATTAAGCACCAACATAGGAGCGGACGAAGCGACCCAGGGAATCGCACAAAGCATATTCTTCGTCGGAATGGGTAGTAAC GATTACCTCAACAACTACCTCATGCCCAATTATCCCACCAAATCCCAGTACAACGGTCAACAGTATGCAGATATGTTGGTCCAGCAGTACACCCGTCAGC TCACTACACTTTACAATATGGGAGCTCGGAAGTTTGTGATAGCTGGGCTGGGTGTAATGGGCTGCATACCGAGCATCTTGGCCCAAAGCCCAGCTGGGCT TTGCTCGGATGAAGTGAACAAGCTGGTGAGTCCATTCAACCAAAATGTGAAAGTAATGATCAACAACTTCAACGCCAATCTCCCTGGAGCTAGGTTCACG TATATCGACATCTCCAAAATGTTCCGTGACGTCCTCACCAACTCCGGAAACTACGGGTTTAGTGTGGTGAACAGAGGGTGCTGTGGGATAGGGAGGAACG CAGGGCAAATAACGTGTTTGCCGTTTCAGACACCGTGTGATGAGCGTGGTCAGTACATTTTCTGGGATGCGTTTCATCCGACGGAGGCTGTCAATGTGCT CATGGGGAAGAAAGCTTTCGATGGTGATGCCACTTATGTTTATCCTATCAATATTGGGCAACTAGCCCGTATTGGATAA
AA sequence Show only first row Show all	>Lus10016929 pacid=23159622 polypeptide=Lus10016929 locus=Lus10016929.g ID=Lus10016929.BGIv1.0 annot-version=v1.0 MVVSISTKKLILCVVVILGVFSQLGFAQFFNGTIGDDHGAGDGGGEAPAAGSGSPKEAMVPALFIFGDSLIDNGNNNDLASLAKANYLPYGIDFNGGPTG RFSNGYTMVDEIAERLGLPLIPPYSQVSSGNGDVTHGVNYASAAAGILDDTGRNFVGRIPFDEQIRNFRSTVDQLSTNIGADEATQGIAQSIFFVGMGSN DYLNNYLMPNYPTKSQYNGQQYADMLVQQYTRQLTTLYNMGARKFVIAGLGVMGCIPSILAQSPAGLCSDEVNKLVSPFNQNVKVMINNFNANLPGARFT YIDISKMFRDVLTNSGNYGFSVVNRGCCGIGRNAGQITCLPFQTPCDERGQYIFWDAFHPTEAVNVLMGKKAFDGDATYVYPINIGQLARIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10016929 [exp]	0	1
AT5G27220			Frigida-like protein (.1)		Lus10033831 [exp]	1.0	0.8792
					Lus10013458 [exp]	5.5	0.7851
AT3G61610			Galactose mutarotase-like supe...		Lus10010131 [exp]	11.7	0.8004
AT3G05470			Actin-binding FH2 (formin homo...		Lus10029897 [exp]	13.4	0.8442
AT5G52800			DNA primases (.1.2.3)		Lus10038837 [exp]	23.6	0.8270
AT5G38070			RING/FYVE/PHD zinc finger supe...		Lus10002282 [exp]	26.3	0.8100
AT3G06470			GNS1/SUR4 membrane protein fam...		Lus10012685 [exp]	26.7	0.8175
AT3G06460			GNS1/SUR4 membrane protein fam...		Lus10020825 [exp]	27.3	0.8085
AT2G36110			Polynucleotidyl transferase, r...		Lus10043049 [exp]	29.2	0.7948
AT1G09200			Histone superfamily protein (....		Lus10031250 [exp]	29.5	0.8215

Compare expression of checked genes

Lus10016929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.