Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35420 196 / 1e-59 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000375 [exp] 215 / 3e-69 AT1G35420 165 / 2e-51 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10035767 [exp] 45 / 4e-05 AT3G23600 340 / 2e-119 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10035287 [exp] 42 / 0.0004 AT2G32520 424 / 4e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10027997 [exp] 42 / 0.0005 AT3G23600 267 / 1e-90 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G079000 [exp] 206 / 3e-63 AT1G35420 332 / 4e-114 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.013G105634 [exp] 81 / 7e-17 AT1G35420 89 / 2e-20 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.007G112700 [exp] 42 / 0.0005 AT3G23600 276 / 2e-94 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01738 [flax] [poplar] DLH Dienelactone hydrolase family
Representative CDS sequence Show only first row Show all	>Lus10016930 pacid=23159624 polypeptide=Lus10016930 locus=Lus10016930.g ID=Lus10016930.BGIv1.0 annot-version=v1.0 ATGAAGGCGGCCTCCACTTCTCCGTTTCCCCTCTCCACCACCGCAGCAACCGCCGTCCTCCGGACTTGCCTCCACCACCGCCGTCATTTCCACATCAGTC AAAAGTCTACTCCATCCGTGCTTCATTTTCCTAGCAAATGCAATTGGGATTGTCATCAGAGATGTGTTAGCTGGACTGGAACAGGAAGAGCAATTTCTCG GAGCCTCGTGGATACGGAAGAAAACGTCGGAAATGAGGAGGCATGTGAGCTTGTTAATGGAGTTGAGATTTCGATAGGGGAAGAACAAGGGGATGATGGT GATGATACCATCAATGCATATCTGTGCACCGCAGTGAAGAACAACAACGGAACAGGGATAGTGCTTCTGTCTGATATTTTCGGGTTCCAAGATTCGGCCA CCAGGGATTTTGCCTACCGTGTTGCCTGCAACGGCTACAAGTATGTTAATCTTACCGCTTCTTCAAGAAGAAATGTCCATTTGAAGTCTACACCAAATTA CCCCAAATCCTATCCCATTGGCGGAGGTAATACTATTGGTGTTCAAAATGCACATTGTGTGCTAAGGAAATTATCATACTATTGGAGTTCTAATTATGTG AGTGGGCTGGACCGTGGTCAAGAAAGGCTCCCTAGATTCGAGACTGATATTGGCGAGTTAGTAAAGGTGTTACTGGACATTCTAATCCTTTTCCTGGAAT GTGTGCTAGTACCAGACTTGTACCGTGGAGACCCCTGGTCGAACGACCGCCCAAGCGACAACCTCCAAGACTGGATAGCAAACCAACACCCAGACAGAAT AGCAAAGGACATCGCCACATCAGCCAAATGGATGTCGGACGAATTCCTAGCAGCCGGAATCTCCAAGAAACTGGGGTTGATCGGATTCTGCTACGGCGGT GGCAGAGTAGTACAAGTTCTGTCCGAAGATCAGGGCAACCGGTTTGGGATCGGAATTTCATTCTGCGGTACTAGAATCGACACAAGCCTTGTCAGGAAGT TAAGTGTCCCAGTCCTGTTTGTTTTAGGGGACAATGACCCTCAGTGCAGCTTGAGTGTAAAGGAGATTGAGAACAACATTGGCGAGGACAGCAAATCGAA AGTGGTTATCTTCGAAGGAAGAGGTCACGGGTTTGCACACCGTCCGAGTTCTGCTGAAGAAGATGAAGATGCAGAGGAGGCTTTTGTCATGCTGAGGAAT TGGTTAAATGATGGTTTGGTGGTGGAGAGTTGA
AA sequence Show only first row Show all	>Lus10016930 pacid=23159624 polypeptide=Lus10016930 locus=Lus10016930.g ID=Lus10016930.BGIv1.0 annot-version=v1.0 MKAASTSPFPLSTTAATAVLRTCLHHRRHFHISQKSTPSVLHFPSKCNWDCHQRCVSWTGTGRAISRSLVDTEENVGNEEACELVNGVEISIGEEQGDDG DDTINAYLCTAVKNNNGTGIVLLSDIFGFQDSATRDFAYRVACNGYKYVNLTASSRRNVHLKSTPNYPKSYPIGGGNTIGVQNAHCVLRKLSYYWSSNYV SGLDRGQERLPRFETDIGELVKVLLDILILFLECVLVPDLYRGDPWSNDRPSDNLQDWIANQHPDRIAKDIATSAKWMSDEFLAAGISKKLGLIGFCYGG GRVVQVLSEDQGNRFGIGISFCGTRIDTSLVRKLSVPVLFVLGDNDPQCSLSVKEIENNIGEDSKSKVVIFEGRGHGFAHRPSSAEEDEDAEEAFVMLRN WLNDGLVVES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35420			alpha/beta-Hydrolases superfam...		Lus10016930 [exp]	0	1
AT5G06690		WCRKC1	WCRKC thioredoxin 1 (.1.2)		Lus10017244 [exp]	2.0	0.9353
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Lus10042524 [exp]	2.8	0.9408
AT1G21350			Thioredoxin superfamily protei...		Lus10028617 [exp]	9.2	0.9049
AT4G35890			winged-helix DNA-binding trans...		Lus10014255 [exp]	12.7	0.8387
AT2G30170			Protein phosphatase 2C family ...		Lus10031355 [exp]	13.2	0.8920
AT2G47240		CER8, LACS1	LONG-CHAIN ACYL-COA SYNTHASE 1...		Lus10002414 [exp]	13.6	0.8936
AT2G39470		PnsL1, PPL2	Photosynthetic NDH subcomplex...		Lus10023436 [exp]	14.0	0.9167
AT1G55370		NDF5	NDH-dependent cyclic electron ...		Lus10002626 [exp]	15.0	0.8885
AT4G31115			Protein of unknown function (D...		Lus10026864 [exp]	16.0	0.9144
AT1G35180			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10010635 [exp]	18.9	0.8525

Compare expression of checked genes

Lus10016930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.