Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22540 603 / 0 Major facilitator superfamily protein (.1) AT1G72125 538 / 0 Major facilitator superfamily protein (.1) AT1G72120 515 / 4e-175 Major facilitator superfamily protein (.1) AT1G22550 513 / 1e-174 Major facilitator superfamily protein (.1) AT1G72140 513 / 2e-174 Major facilitator superfamily protein (.1) AT1G22570 495 / 3e-167 Major facilitator superfamily protein (.1) AT1G72130 493 / 9e-167 Major facilitator superfamily protein (.1.2) AT3G54450 411 / 8e-135 Major facilitator superfamily protein (.1) AT3G54140 372 / 8e-120 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 357 / 9e-114 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008252 [exp] 909 / 0 AT1G22540 641 / 0.0 Major facilitator superfamily protein (.1) Lus10009462 [exp] 492 / 4e-166 AT1G22540 580 / 0.0 Major facilitator superfamily protein (.1) Lus10024156 [exp] 395 / 2e-128 AT3G54450 593 / 0.0 Major facilitator superfamily protein (.1) Lus10039521 [exp] 383 / 1e-123 AT3G54450 612 / 0.0 Major facilitator superfamily protein (.1) Lus10040099 [exp] 375 / 2e-120 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 369 / 5e-118 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10035516 [exp] 359 / 1e-114 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10040100 [exp] 355 / 1e-112 AT2G02040 835 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10021132 [exp] 354 / 1e-112 AT3G54140 814 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G106600 [exp] 701 / 0 AT1G22540 666 / 0.0 Major facilitator superfamily protein (.1) Potri.013G107050 [exp] 690 / 0 AT1G22540 670 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079551 [exp] 649 / 0 AT1G22540 662 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106500 [exp] 642 / 0 AT1G22540 644 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106400 [exp] 632 / 0 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106700 [exp] 619 / 0 AT1G22540 612 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079600 [exp] 605 / 0 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079700 [exp] 596 / 0 AT1G22540 547 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106925 [exp] 593 / 0 AT1G22540 605 / 0.0 Major facilitator superfamily protein (.1) Potri.003G197333 [exp] 425 / 5e-140 AT3G54450 663 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family CL0178 [flax] [poplar] PUA PF02190 [flax] [poplar] LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain
Representative CDS sequence Show only first row Show all	>Lus10016932 pacid=23159614 polypeptide=Lus10016932 locus=Lus10016932.g ID=Lus10016932.BGIv1.0 annot-version=v1.0 ATGAGCTATGGTGCGAGCCACGTCAATCCCTCTAGCCTCACCCGCGTCACTGAGCCGCGAATCCGTAGCTGGAGAAGCGACTCAACAACAACGTACTCTT CTTCCCGCCACTCTTCCTTTCCGCCCTTCAATTTCCAGCTCAAACACCACCTCTTCCGTCGTACAATCCAGACATGGCGCTGTCAATCATCGCTGAGTTT TAGTACTCTGAAGCTCCCTCTCCTTCCTTTTAACTCGAATGAGGTGCTAGTTCCTTCTGAGAGCAAGACTCTGCATCTTTACGAAGCTAGGTACCTGGCT TTACTTGAAGAGGCTTTGGCACAGAAGCAGATGTTTGTGCATTTTGTTTTGGATCCTGTCTCCATTAGCGATTCAGGAAGTGAAGCATCTTTTGCTGCTA GATACGGTTGCCTGGTCAATTTGGAAAGTGTTGAGCGCTTAGATGTTGGAGCATTGGTGTCTATTCGAGGAATTGGCCGCGTCAAGCTTGTTGGGTTCCT ACAGTCAGAGCCTTACTTGAGAGGTGAAGTGATGCCGATGCAGGACATTGTTGACAGCAGCCAGAATGCGATCAACTCAAAAGTTACAGAACTGAAGGAC GCTCATGGCAAGTTAAATCGCCTAGAAATCAGACTTAAGGAACCCGCATTAGAATGTGATGGAGCTTTCATCCCGTCTCTCGCCGAAAGAGTATCCTTTG CAGCTCTGCAACCAGTTTCAGGCAAACTAAATTTCATTACATCACATCTACATTCGTTCCAGTACAAGGGCGTTGAAGTAGCGGAGAGATTTGCGTATTA CGGGATCGGTTCAAATCTGATTACCTACTTGACGGGGCCGCTCGGCCAGTCTACGGCCGCCGCAGCTGCGAACGTGAACGCTTGGTCCGGAGCTGCTTCC TTGCTGCCTCTTTTGGGCGCTTTTGTTGCTGATACCGTCCTCGGGAAATACCGCACCATTATTGTTGCGTCTGCTGGTTACGTTTTGGGACTTGGGTTGC TGACTTCATCAGCTCTTCTTCCTGCGCTAGGTGTTTTTAATTGCCAAAGCCAAGTTACGAGTAGTGCAGCGGCAGCATGTCCTCCTCATCCAGTTCAGAT AGCTTTGTTCTTTTTCTCATTGTATCTGGTAGCACTTTCACAAGGAGGGCACAAACCTTGTGTTCAGGCATTTGGCGCAGATCAGTTCGATGGAAACGAC CCTGTGGAATGCAAAGCGAAAAGCTCCTTTTTCAACTGGTGGTATTTTTGCATGTGTGCCGGGACCTTAGTAGCACTAGCGGTCTTAAACTATGTACAGG ATAATCTTAACTGGGTTCTTGGATTCGGAATCCCGTGTCTCGTCATGGTCTTTGCCCTTATCATCTTTATATTTGGGACAAGGACATATAGGTATGGAGC CACGAGCGACGAGGATAATGGATTTCTCAGAATCAGTAAGGTTTTTGGTGCAGCAATAAGAAACTGGCGTATTGATTCTTCTGCAGTTGCTCTCGAAGAA GAGTCTAGAGGAACTCTACCCCATGAACATTCTGATCAACTCAAGTTTCTCAACAAGGCTCTACTTGCATCAGAAAGTTCAAAGGATGGTGGGAAGATAT GCACTTTGAGTGAAGTTGAAGAAGCCAAGTCAGTACTTAGGCTCGTGCCAATATGGGCTACTTGCTTGGTGTATGGAATTGTGTTTGCACAGTCTACAAC TTTCTTCACGAAACAGGGATTAACCATGGATAGAACACTCTTCCCTGGTTTTGAGATTCCACCAGCTACCTTGCAATCTTTCATAACTCTTGCCATTTGC ATCTTCATACCGATATATGATGGCATCCTTGTTCCTGTAGCAAGAGCCATAACCAGAAAGCCGTTAGGCATCTCAATGCTCCAAAGAATTGGAACTGGGA TATTCTTGTCTCTTGTTTCCATGGTTGTAGCTGCTGTTGTTGAGATCAAGAGGCTTCAAATCGCCCGGGACCATGGAATCATAGACACACCGAGTGTGAA AGTCCCAATGAGTTTCTGGTGGCTGGTTCCTCAGTACGTCTTGTTTGGAATTTCAGATGTATTCACCATGGTTGGACTGCAAGAGTTCTTCTATGATCAA GTCCCTAGTGACCTAAGGAGCATGGGCCTGTCTCTATACCTCAGTATATTTGGAGTGGGAAGCTTTCTCAGCAGCTTTCTAATATCTGCCATTGACAAAG CAACCGGCAGCGATGGACACGACAGCTGGTTCTCCAATAACATAAACAAAGGTCATCTCGATTACTTCTATTGGCTACTTGCGGGACTGAGCGCAGTTCA ACTGATCCTCTACTTGTACTTTGCGAAATCTTATGTTTACAACAGAGGAAGCTCTGTTTAA
AA sequence Show only first row Show all	>Lus10016932 pacid=23159614 polypeptide=Lus10016932 locus=Lus10016932.g ID=Lus10016932.BGIv1.0 annot-version=v1.0 MSYGASHVNPSSLTRVTEPRIRSWRSDSTTTYSSSRHSSFPPFNFQLKHHLFRRTIQTWRCQSSLSFSTLKLPLLPFNSNEVLVPSESKTLHLYEARYLA LLEEALAQKQMFVHFVLDPVSISDSGSEASFAARYGCLVNLESVERLDVGALVSIRGIGRVKLVGFLQSEPYLRGEVMPMQDIVDSSQNAINSKVTELKD AHGKLNRLEIRLKEPALECDGAFIPSLAERVSFAALQPVSGKLNFITSHLHSFQYKGVEVAERFAYYGIGSNLITYLTGPLGQSTAAAAANVNAWSGAAS LLPLLGAFVADTVLGKYRTIIVASAGYVLGLGLLTSSALLPALGVFNCQSQVTSSAAAACPPHPVQIALFFFSLYLVALSQGGHKPCVQAFGADQFDGND PVECKAKSSFFNWWYFCMCAGTLVALAVLNYVQDNLNWVLGFGIPCLVMVFALIIFIFGTRTYRYGATSDEDNGFLRISKVFGAAIRNWRIDSSAVALEE ESRGTLPHEHSDQLKFLNKALLASESSKDGGKICTLSEVEEAKSVLRLVPIWATCLVYGIVFAQSTTFFTKQGLTMDRTLFPGFEIPPATLQSFITLAIC IFIPIYDGILVPVARAITRKPLGISMLQRIGTGIFLSLVSMVVAAVVEIKRLQIARDHGIIDTPSVKVPMSFWWLVPQYVLFGISDVFTMVGLQEFFYDQ VPSDLRSMGLSLYLSIFGVGSFLSSFLISAIDKATGSDGHDSWFSNNINKGHLDYFYWLLAGLSAVQLILYLYFAKSYVYNRGSSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22540			Major facilitator superfamily ...		Lus10016932 [exp]	0	1
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10025899 [exp]	2.4	0.9170
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10004574 [exp]	2.8	0.9165
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10003810 [exp]	5.1	0.9280
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Lus10013773 [exp]	6.5	0.9112
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10018285 [exp]	7.9	0.8670
AT5G57850			D-aminoacid aminotransferase-l...		Lus10006441 [exp]	8.0	0.9187
AT1G12520		ATCCS, CCS1	copper chaperone for SOD1 (.1....		Lus10007031 [exp]	9.4	0.8872
AT1G70410		ATBCA4	beta carbonic anhydrase 4 (.1....		Lus10030614 [exp]	10.4	0.9025
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Lus10004575 [exp]	11.0	0.8674
AT3G11810			unknown protein		Lus10037134 [exp]	11.3	0.9033

Compare expression of checked genes

Lus10016932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.