Plant FIBer expression Database

Lus10016934 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G71910 47 / 1e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014823
[exp]
215 / 5e-67 AT1G71980 488 / 3e-168 Protease-associated (PA) RING/U-box zinc finger family protein (.1)
Lus10009436
[exp]
43 / 4e-05 ND 37 / 0.009
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G114000
[exp]
52 / 3e-08 AT1G71910 48 / 7e-07 unknown protein
Potri.019G084500
[exp]
48 / 4e-07 AT1G71910 / unknown protein
Potri.018G137700
[exp]
45 / 4e-06 ND /
Potri.T045901
[exp]
45 / 5e-06 ND /
PFAM info
Representative CDS sequence
>Lus10016934 pacid=23159610 polypeptide=Lus10016934 locus=Lus10016934.g ID=Lus10016934.BGIv1.0 annot-version=v1.0
ATGGCCACTTCCCTAACCGAGGAGTTCAGCTTCCCCACCACAACCTCCGCCACCGGCGTTGAGTCCCCGCCACTCTGGCGCCTCTCCCCCTCCGCCTCTC
CACATCAAAGAAGGAGCTTTTCCCATGCGGCCGAGTACAGTAAAGACTCCAACAACAATCATCATAATAATTCATCTGGTGTAGAGAAGAAAATGGACAT
GTTGTGGGAAGACTTCAACGAGGAGGAACTCATCACTAGCTCCAGGTCACCACGAGTCTACCCTGTGCTCGACCGCAGGGGATCATTGTCACTCCACCAC
TATGATAAAAGATCGTCAGGAGGCGTCATGGTCGACGTGGGATGCGTTGAAGGCCGCCTTAGACTCTCTCCTAAACTGCGTACTAGTACTAATAGTGGTG
GTAGTACTAAGCCTGGGTTGGTGGTGCTCATGAAGGTGTTGAAGAGACTTCTCTTGGTTCACCATAAACATACCGCCCGGAGACCCAAGCCGGCCCCGTC
GCCAATCGAGGTTAAACTTAGCCGCTCACCATGGTGA
AA sequence
>Lus10016934 pacid=23159610 polypeptide=Lus10016934 locus=Lus10016934.g ID=Lus10016934.BGIv1.0 annot-version=v1.0
MATSLTEEFSFPTTTSATGVESPPLWRLSPSASPHQRRSFSHAAEYSKDSNNNHHNNSSGVEKKMDMLWEDFNEEELITSSRSPRVYPVLDRRGSLSLHH
YDKRSSGGVMVDVGCVEGRLRLSPKLRTSTNSGGSTKPGLVVLMKVLKRLLLVHHKHTARRPKPAPSPIEVKLSRSPW

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G71910 unknown protein Lus10016934
[exp]
0 1
AT3G46510 ATPUB13 ARABIDOPSIS THALIANA PLANT U-B... Lus10017444
[exp]
3.3 0.9213
AT1G70570 anthranilate phosphoribosyltra... Lus10006201
[exp]
4.2 0.9162
AT4G31540 ATEXO70G1 exocyst subunit exo70 family p... Lus10027347
[exp]
6.0 0.8786
AT2G05940 RIPK RPM1-induced protein kinase, P... Lus10008110
[exp]
6.2 0.8692
AT1G08080 ATACA7, ACA7 A. THALIANA ALPHA CARBONIC ANH... Lus10016105
[exp]
6.3 0.9040
AT5G51500 Plant invertase/pectin methyle... Lus10031140
[exp]
9.9 0.8966
Lus10012067
[exp]
11.0 0.8976
AT1G28590 GDSL-like Lipase/Acylhydrolase... Lus10000523
[exp]
13.3 0.8803
AT1G12550 HPR3 hydroxypyruvate reductase 3, D... Lus10014133
[exp]
16.0 0.8257
AT3G51660 Tautomerase/MIF superfamily pr... Lus10000344
[exp]
16.4 0.9094

Lus10016934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.