Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71980 467 / 4e-163 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT4G09560 313 / 9e-103 NHL22 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT1G22670 299 / 7e-98 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT1G35630 286 / 3e-94 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT5G66160 191 / 2e-57 JR700, ATRMR1 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) AT1G35625 168 / 4e-50 RING/U-box superfamily protein (.1) AT3G19910 69 / 1e-12 RING/U-box superfamily protein (.1) AT2G17450 66 / 3e-12 RHA3A RING-H2 finger A3A (.1) AT1G20823 64 / 9e-12 RING/U-box superfamily protein (.1) AT4G09120 66 / 2e-11 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014823 [exp] 704 / 0 AT1G71980 488 / 3e-168 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10006074 [exp] 526 / 0 AT1G71980 466 / 2e-162 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10009438 [exp] 387 / 1e-131 AT1G71980 329 / 1e-108 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10041896 [exp] 194 / 3e-58 AT5G66160 283 / 3e-94 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) Lus10028443 [exp] 192 / 9e-58 AT5G66160 286 / 6e-96 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) Lus10000053 [exp] 144 / 2e-41 AT1G71980 137 / 3e-39 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10022743 [exp] 70 / 1e-13 AT3G10910 154 / 5e-48 RING/U-box superfamily protein (.1) Lus10010182 [exp] 68 / 3e-12 AT3G19910 298 / 2e-99 RING/U-box superfamily protein (.1) Lus10017385 [exp] 66 / 1e-11 AT3G19910 297 / 4e-99 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G082500 [exp] 523 / 0 AT1G71980 449 / 3e-156 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Potri.013G111500 [exp] 466 / 1e-162 AT1G71980 427 / 5e-147 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Potri.005G111100 [exp] 185 / 2e-55 AT5G66160 264 / 3e-88 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) Potri.003G176500 [exp] 72 / 2e-13 AT1G04790 264 / 2e-78 RING/U-box superfamily protein (.1) Potri.001G127100 [exp] 69 / 2e-12 AT5G45290 286 / 2e-89 RING/U-box superfamily protein (.1.2) Potri.005G090800 [exp] 67 / 4e-12 AT3G19910 187 / 5e-57 RING/U-box superfamily protein (.1) Potri.003G075200 [exp] 64 / 5e-12 AT5G05280 137 / 2e-41 RING/U-box superfamily protein (.1) Potri.003G106600 [exp] 68 / 6e-12 AT5G45290 320 / 4e-102 RING/U-box superfamily protein (.1.2) Potri.006G190500 [exp] 67 / 7e-12 AT5G45290 150 / 3e-39 RING/U-box superfamily protein (.1.2) Potri.005G113200 [exp] 64 / 1e-11 AT2G17450 66 / 2e-13 RING-H2 finger A3A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10016936 pacid=23159605 polypeptide=Lus10016936 locus=Lus10016936.g ID=Lus10016936.BGIv1.0 annot-version=v1.0 ATGGAGAAATTTGTAATTATGGAGCTTTTGTTGTTGTCCGTCCTAGCGCGTTGTTTCACGAGTTGGGCAAGTGTGGTTCTAATTGAGAATAATGTCACTA TGTCTTTCGATGACATTGAAGCGAATTTTGGACCGCCGGTAAAGAGTTCAGGTGAATATGGAGTGTTGTATGTGGCGGCGCCTCTAGATGCCTGTTCGGA TTTGACTAATAAAGTGGAAAAGGTAGGGAATTCTAGCTCGTCACCTTTTTTGCTGATCATAAGAGGAGGTTGCAGCTTTGAAGATAAAGTTAGAAGAGCA CAGGCAGCTGGCTTCCATGCTGCTATCGTTTACGATAATGAAGACAGTGGTTTGTTGGTTGCAATTCCTGATCTTTTACTCCAAATTGAAGTGGCAGGGA ATTCAGCTGGCATAAGGAGTCATGCTGTATTTGTTGCAAAGTCTTCTGGTGAAACGTTAATGAAGTATGCTGGCTTGACTGACATGGGGCTATGGATTAT CCCCAGCTATGAAAATTCAGCTTGGTCTATAATGGCAATATCTTTCATTTCTTTGCTGGCAATGTCAGCAGTTTTGGCCACTTGTTTCTTTGTCCGGAGG CATCGGATAAGAAGACAGCGCCCACTATCTTCTCGTGCTAGGGAATTTCATGGAATGAGCAAGCGACTGGTAAAAGCAATGCCAAGCTTGATTTTTACCA CTGTTCAGGAGGATAATTGCACTTCTTCTACTTGTGCTATTTGCCTCGAAGATTACAGCGTTGGAGAAAAGCTTCGGATTCTACCCTGTCGACACAAGTT CCATGCTCTCTGTGTGGATTCTTGGCTTACAACATGGAGAACATTCTGTCCTGTGTGCAAGAGAGATGCGAGAACTAGTACGGGCGAGCTACCGGCATCT GATTCTACACCATTGCTTTCATCCAACCCTTCTTCAGTGGTTTCCTCGTATGTACTGTCATCCTTTAGATCTACAACCTCATCAGCTATAAGAATCGGCC AGCCATCGTATTTTGGCACTCCTTATGCCCAGCAGTCCGTTGGATCCCTTAGTATGAGCCGCAGCAATGCTGATCTTAGAAGCATGCCCTCACACTGCTC TCATGTGATTTCACCTTATCCAGTTGGTTACTCCTCCATTTCACCCCTCAACACTAGATTCATGTCTGTATACAATCACAGTCCAAGCAATGCCTCACCG AGTTTAGCTGGCTCGACGAGTTATCAGCCTCGCCCACTGCATTGTAGCGACTCTGGTGCAAGTTTCTCCCCATTTGCTTCTGCTCAGTCCCTTCCAGACT GTTAG
AA sequence Show only first row Show all	>Lus10016936 pacid=23159605 polypeptide=Lus10016936 locus=Lus10016936.g ID=Lus10016936.BGIv1.0 annot-version=v1.0 MEKFVIMELLLLSVLARCFTSWASVVLIENNVTMSFDDIEANFGPPVKSSGEYGVLYVAAPLDACSDLTNKVEKVGNSSSSPFLLIIRGGCSFEDKVRRA QAAGFHAAIVYDNEDSGLLVAIPDLLLQIEVAGNSAGIRSHAVFVAKSSGETLMKYAGLTDMGLWIIPSYENSAWSIMAISFISLLAMSAVLATCFFVRR HRIRRQRPLSSRAREFHGMSKRLVKAMPSLIFTTVQEDNCTSSTCAICLEDYSVGEKLRILPCRHKFHALCVDSWLTTWRTFCPVCKRDARTSTGELPAS DSTPLLSSNPSSVVSSYVLSSFRSTTSSAIRIGQPSYFGTPYAQQSVGSLSMSRSNADLRSMPSHCSHVISPYPVGYSSISPLNTRFMSVYNHSPSNASP SLAGSTSYQPRPLHCSDSGASFSPFASAQSLPDC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71980			Protease-associated (PA) RING/...		Lus10016936 [exp]	0	1
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10039239 [exp]	10.7	0.8495
AT2G25760			Protein kinase family protein ...		Lus10005479 [exp]	15.5	0.8144
AT5G46570		BSK2	BR-signaling kinase 2 (.1)		Lus10035136 [exp]	20.6	0.8330
AT1G51160			SNARE-like superfamily protein...		Lus10027541 [exp]	27.2	0.8300
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10037958 [exp]	28.6	0.8305
AT4G08960			phosphotyrosyl phosphatase act...		Lus10040491 [exp]	29.6	0.8206
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Lus10041857 [exp]	44.0	0.8122
AT4G08960			phosphotyrosyl phosphatase act...		Lus10011297 [exp]	47.5	0.8206
AT4G26000		PEP	PEPPER, RNA-binding KH domain-...		Lus10026963 [exp]	56.9	0.8116
AT5G21105			Plant L-ascorbate oxidase (.1....		Lus10026753 [exp]	77.5	0.7989

Compare expression of checked genes

Lus10016936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.