Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54160 100 / 4e-25 ATOMT1 O-methyltransferase 1 (.1) AT1G77520 86 / 6e-20 O-methyltransferase family protein (.1) AT5G37170 82 / 1e-18 O-methyltransferase family protein (.1) AT1G33030 81 / 3e-18 O-methyltransferase family protein (.1) AT3G53140 80 / 1e-17 O-methyltransferase family protein (.1) AT5G53810 69 / 1e-13 O-methyltransferase family protein (.1) AT1G77530 68 / 2e-13 O-methyltransferase family protein (.1) AT1G21130 67 / 4e-13 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2) AT1G21120 67 / 4e-13 IGMT2 indole glucosinolate O-methyltransferase 2, O-methyltransferase family protein (.1) AT1G51990 66 / 6e-13 O-methyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014825 [exp] 174 / 1e-53 AT1G33030 270 / 8e-89 O-methyltransferase family protein (.1) Lus10009442 [exp] 145 / 3e-42 AT1G33030 320 / 9e-108 O-methyltransferase family protein (.1) Lus10032929 [exp] 101 / 1e-25 AT5G54160 601 / 0.0 O-methyltransferase 1 (.1) Lus10015576 [exp] 101 / 1e-25 AT5G54160 595 / 0.0 O-methyltransferase 1 (.1) Lus10006146 [exp] 88 / 1e-20 AT5G54160 338 / 5e-115 O-methyltransferase 1 (.1) Lus10005133 [exp] 85 / 1e-19 AT5G54160 381 / 1e-131 O-methyltransferase 1 (.1) Lus10002669 [exp] 82 / 2e-18 AT5G54160 376 / 5e-130 O-methyltransferase 1 (.1) Lus10014400 [exp] 79 / 3e-17 AT3G53140 562 / 0.0 O-methyltransferase family protein (.1) Lus10023892 [exp] 76 / 2e-16 AT3G53140 560 / 0.0 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G180700 [exp] 100 / 2e-25 AT5G54160 393 / 8e-137 O-methyltransferase 1 (.1) Potri.001G451100 [exp] 100 / 6e-25 AT5G54160 384 / 7e-133 O-methyltransferase 1 (.1) Potri.012G006400 [exp] 99 / 1e-24 AT5G54160 605 / 0.0 O-methyltransferase 1 (.1) Potri.002G180433 [exp] 99 / 1e-24 AT5G54160 412 / 4e-144 O-methyltransferase 1 (.1) Potri.002G180500 [exp] 99 / 1e-24 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180466 [exp] 99 / 1e-24 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180600 [exp] 99 / 1e-24 AT5G54160 413 / 2e-144 O-methyltransferase 1 (.1) Potri.016G101600 [exp] 96 / 3e-24 AT5G54160 276 / 5e-92 O-methyltransferase 1 (.1) Potri.011G150500 [exp] 95 / 2e-23 AT5G54160 364 / 2e-125 O-methyltransferase 1 (.1) Potri.015G003100 [exp] 94 / 5e-23 AT5G54160 583 / 0.0 O-methyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10016939 pacid=23159617 polypeptide=Lus10016939 locus=Lus10016939.g ID=Lus10016939.BGIv1.0 annot-version=v1.0 ATGCTTTTCCAGAATCTCAAGTTGTTGCTAATTGAACATTTGTGGATTAATTTTGGTGGTGGTTGGTGCAAGGTGTGTTTGAAGGAAGCAGTGTTGGAAG ATGGAGGGAATGCATTCTACAAAGCTTATGGGATGCAGGGTATGGAGTACTCTCACCAAGGTCTTGCAAATCTGGAGTCGCTTGTTGATGTGGGTGGTGG TAATTGCTCCACCCTTCACCTCATCCTCACCAGAGTCCCTACCATTTCTAAGGCCATCAACTTCGATTTGCCTTCTGTCATCTCTAACTCTCCATCCTAT CCAGGTGTGGAGCATGTAGCAGGTTATATGTTTGAAAGCGTGCCAAAGGGAGATTCCATCTTCATCAAGAGACCTCTGAAACCACTTGCTGCAAAAGCCT TGCTTCAGTTCAATCTCTACAGAAACGGGGTCAAACCTCACGGCAAGGAAAGGGCTCTCACACAATTTCAAAGCTTGGCACAACAAGCTGCATTTGCAAG TGTTCGCACCGCTTGTTCAGCGTTTAACTTCTCAGTTCTCGAGTTCCTCAAAACTCAGACATGCATCTAA
AA sequence Show only first row Show all	>Lus10016939 pacid=23159617 polypeptide=Lus10016939 locus=Lus10016939.g ID=Lus10016939.BGIv1.0 annot-version=v1.0 MLFQNLKLLLIEHLWINFGGGWCKVCLKEAVLEDGGNAFYKAYGMQGMEYSHQGLANLESLVDVGGGNCSTLHLILTRVPTISKAINFDLPSVISNSPSY PGVEHVAGYMFESVPKGDSIFIKRPLKPLAAKALLQFNLYRNGVKPHGKERALTQFQSLAQQAAFASVRTACSAFNFSVLEFLKTQTCI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10016939 [exp]	0	1
AT3G20530			Protein kinase superfamily pro...		Lus10040050 [exp]	5.0	0.7602
AT2G18540			RmlC-like cupins superfamily p...		Lus10041722 [exp]	9.4	0.7696
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10017604 [exp]	10.6	0.7636
AT2G45080		CYCP3;1	cyclin p3;1 (.1)		Lus10028174 [exp]	12.0	0.7798
AT4G24972		TPD1	tapetum determinant 1 (.1)		Lus10016744 [exp]	18.3	0.7542
AT1G14690		MAP65-7	microtubule-associated protein...		Lus10035098 [exp]	37.2	0.7501
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10008836 [exp]	40.5	0.7517
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10001902 [exp]	47.2	0.7482
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10027210 [exp]	48.9	0.7450
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10037080 [exp]	50.4	0.7255

Compare expression of checked genes

Lus10016939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.