Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17200 318 / 4e-105 Pectin lyase-like superfamily protein (.1) AT3G15720 310 / 2e-101 Pectin lyase-like superfamily protein (.1.2) AT4G35670 300 / 2e-98 Pectin lyase-like superfamily protein (.1) AT5G27530 302 / 3e-98 Pectin lyase-like superfamily protein (.1) AT5G44840 277 / 1e-89 Pectin lyase-like superfamily protein (.1) AT3G07970 258 / 2e-81 QRT2 QUARTET 2, Pectin lyase-like superfamily protein (.1) AT5G44830 252 / 2e-80 Pectin lyase-like superfamily protein (.1) AT1G23460 253 / 2e-79 Pectin lyase-like superfamily protein (.1) AT1G80170 250 / 3e-78 Pectin lyase-like superfamily protein (.1) AT5G14650 248 / 2e-77 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014826 [exp] 715 / 0 AT5G17200 301 / 1e-97 Pectin lyase-like superfamily protein (.1) Lus10040610 [exp] 389 / 4e-132 AT5G17200 346 / 7e-116 Pectin lyase-like superfamily protein (.1) Lus10032875 [exp] 343 / 7e-115 AT3G15720 342 / 3e-114 Pectin lyase-like superfamily protein (.1.2) Lus10002727 [exp] 293 / 5e-96 AT3G15720 254 / 9e-81 Pectin lyase-like superfamily protein (.1.2) Lus10036035 [exp] 287 / 8e-94 AT3G15720 339 / 3e-114 Pectin lyase-like superfamily protein (.1.2) Lus10040604 [exp] 277 / 7e-90 AT3G15720 249 / 1e-79 Pectin lyase-like superfamily protein (.1.2) Lus10018302 [exp] 257 / 1e-83 AT5G17200 242 / 3e-78 Pectin lyase-like superfamily protein (.1) Lus10019711 [exp] 254 / 7e-80 AT3G07970 461 / 1e-160 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10042371 [exp] 239 / 1e-73 AT3G07970 432 / 5e-149 QUARTET 2, Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G028700 [exp] 348 / 2e-116 AT5G27530 362 / 2e-121 Pectin lyase-like superfamily protein (.1) Potri.012G119700 [exp] 336 / 3e-112 AT5G17200 356 / 1e-120 Pectin lyase-like superfamily protein (.1) Potri.015G088600 [exp] 288 / 2e-93 AT1G70500 323 / 1e-106 Pectin lyase-like superfamily protein (.1) Potri.006G252900 [exp] 276 / 4e-89 AT5G44840 297 / 3e-98 Pectin lyase-like superfamily protein (.1) Potri.009G060400 [exp] 256 / 1e-80 AT3G07970 514 / 0.0 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.001G463000 [exp] 254 / 1e-79 AT1G23460 634 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.011G159000 [exp] 250 / 4e-78 AT1G23460 667 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G211900 [exp] 249 / 1e-77 AT1G23460 638 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.009G169100 [exp] 236 / 4e-73 AT4G18180 563 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G171900 [exp] 236 / 4e-73 AT1G80170 506 / 1e-178 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10016940 pacid=23159621 polypeptide=Lus10016940 locus=Lus10016940.g ID=Lus10016940.BGIv1.0 annot-version=v1.0 ATGTTTTCTCGGTACAGTAAAGCTGTGGAGGCTAATTACGTGATTGTAACAACAAGCAGCTTAGGTTTGGGATTATCCTTGTTGTTGATGCTGCTGTTGT TCCCTCACTCTTGTAGTTGTTCCTCTTCTTCTCCTACGCTGCTGGGCAATATTAGTAGATCATTATCATCATCAAACATCTTCAATGTCCTCGACTATGG AGCTGTGGGAGATGGAAAAACCGACGATTCCCAGGCGTTCCTGAAAGCATGGAAGGATGTTTGTGCAGCAGAGGTTGTAGGAAGAGGAATTGGAATTCCA ACAGTGGTGATACCAAGTAGGAGTAAGGAGGATGCTGAATTCCTAGTGAACCCAGTTGTGTTCCGTGGTCCATGTAACTCCCATCACCTTCATTTTCAGG TGGGAGCAAAGATAGTGGCCCCAAACGAGACAGAAGCGTGGGGGAATAACAGGGAGGCGTGGATTGGATTCGTGAACGTCGACGGCTTAAGTTTGAACGG CGGAGGTTCCTTTGATGGTCGGGGTCTCATTTGGTGGAGTTTATGCAATATCCAACGCAACTGCACTCGACCAACTGCGTTGTTCTTCAACAACTGTAAT CGGCTAAGAGTGAGCAAACTGAGCCACCTAAACAGTCCGAGGAACCACATCGGCGTAGCTTCCTCCTCCAACGTAAAAATCTCCAACCTAAACATCTCCG CCCCGGAAGACTCCCCCAACACCGACGGAATCGACATATCCGGTTCCAGCAACGTCTACGTTGAAGACACCTTCATCGGTACCGGGGATGACTGCATCGC CATCAACGGCTTCTCTTCCTACATAACCATCATCGGGGTGGTGTGTGGGCCAGGCCACGGCATTAGCGTCGGAAGCCTGGGAGAGGACGGAGCATACCAG ACCGTGTCCGATGTTCTTGTCAAAGACTGCGTCTTTAACCGCACCCTTAATGGTGCCCGCATCAAAACATGGAAGGGCGGGAGTGGGTACGTGAAGAAGA TCAAGTTCGAGAGGATAACCCTGATAGATTCAGGAAACCCCATCATTATAAACCAAGATTACGTCAATAACAGCAGCTTCGGGCCCGCGCCGGGGTCCAA CATCCAAATTAGCCAGGTCTCGTACGACGGGGTGTTGGGAACATCGAGCGAAGGGAGGTCCATTTACTTCAACTGCGAACAAGGATCGTCCGGGATGGGG TGCACTGACATATTTGTAAACAACGTCCACATCAGCGCCGGAACGCCGAACGTGGAGCGGCCGTATGCTGTCTGCATTAATGCTCACGGTAATTACAACT CTTCGTTTCCGAATGTGCTCTGCCTCTCATCCTTGTAA
AA sequence Show only first row Show all	>Lus10016940 pacid=23159621 polypeptide=Lus10016940 locus=Lus10016940.g ID=Lus10016940.BGIv1.0 annot-version=v1.0 MFSRYSKAVEANYVIVTTSSLGLGLSLLLMLLLFPHSCSCSSSSPTLLGNISRSLSSSNIFNVLDYGAVGDGKTDDSQAFLKAWKDVCAAEVVGRGIGIP TVVIPSRSKEDAEFLVNPVVFRGPCNSHHLHFQVGAKIVAPNETEAWGNNREAWIGFVNVDGLSLNGGGSFDGRGLIWWSLCNIQRNCTRPTALFFNNCN RLRVSKLSHLNSPRNHIGVASSSNVKISNLNISAPEDSPNTDGIDISGSSNVYVEDTFIGTGDDCIAINGFSSYITIIGVVCGPGHGISVGSLGEDGAYQ TVSDVLVKDCVFNRTLNGARIKTWKGGSGYVKKIKFERITLIDSGNPIIINQDYVNNSSFGPAPGSNIQISQVSYDGVLGTSSEGRSIYFNCEQGSSGMG CTDIFVNNVHISAGTPNVERPYAVCINAHGNYNSSFPNVLCLSSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17200			Pectin lyase-like superfamily ...		Lus10016940 [exp]	0	1

Compare expression of checked genes

Lus10016940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.