Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22620 363 / 7e-119 ATSAC1 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) AT3G14205 140 / 8e-37 Phosphoinositide phosphatase family protein (.1) AT3G43220 137 / 7e-36 Phosphoinositide phosphatase family protein (.1.2) AT5G20840 136 / 2e-35 Phosphoinositide phosphatase family protein (.1) AT1G17340 122 / 2e-30 Phosphoinositide phosphatase family protein (.1) AT3G59770 42 / 0.0005 AtSAC9, SAC9 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) AT3G51460 42 / 0.0006 rhd4 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014827 [exp] 527 / 0 AT1G22620 1389 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Lus10027650 [exp] 160 / 7e-44 AT3G43220 936 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Lus10039913 [exp] 157 / 7e-43 AT3G43220 842 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Lus10013184 [exp] 152 / 6e-41 AT3G14205 923 / 0.0 Phosphoinositide phosphatase family protein (.1) Lus10037446 [exp] 152 / 7e-41 AT3G14205 947 / 0.0 Phosphoinositide phosphatase family protein (.1) Lus10016697 [exp] 44 / 0.0001 AT3G51460 947 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Lus10035993 [exp] 44 / 0.0001 AT3G51460 929 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Lus10043474 [exp] 42 / 0.0007 AT3G59770 1989 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10034113 [exp] 42 / 0.0007 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G080300 [exp] 379 / 1e-124 AT1G22620 1397 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Potri.013G107950 [exp] 364 / 5e-119 AT1G22620 1355 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Potri.018G063700 [exp] 154 / 8e-42 AT3G43220 1043 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Potri.006G136400 [exp] 150 / 4e-40 AT3G43220 1018 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Potri.003G071300 [exp] 149 / 4e-40 AT3G14205 1011 / 0.0 Phosphoinositide phosphatase family protein (.1) Potri.001G163900 [exp] 147 / 4e-39 AT3G14205 987 / 0.0 Phosphoinositide phosphatase family protein (.1) Potri.013G128500 [exp] 43 / 0.0003 AT3G59770 2267 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016941 pacid=23159628 polypeptide=Lus10016941 locus=Lus10016941.g ID=Lus10016941.BGIv1.0 annot-version=v1.0 ATGAATCTGACCTATGTGCCCAAAGTGGATCCCGATAGTTCAATTGCTGCAGCTCTTATGGATATGTATCAAAGTATGGGGGACGCTCTTGCACACCAAT ATGGTGGTTCAGCAGCTCATACTACTGTGTTTACAGAGAGGCAGGGTAAGTGGAAAGCTAGTACTCAATCAAGAGAGTTTATAAAGTCTATCAAGAGATA CTACAGCAATGCGTATACTGATGGTGAAAAGCAGGACGCAATAAACTTGTTCCTTGGTTACTTCCGACCACAAGAAGGGAGACTTGCTCTCTGGGAGTTG GACACTGACTATTACCTTCATGTAGCAGCAGTTGGAGATGACCCTGCTGATAGTGGCATTGAAACAACTAATTCGAGGGTTGGAGCAGGATTGAACCTTG CTCCTATTCCCGCTTGCAAGGAAGACTTCTCCAAGATGAAATTAACATCATTTGATAAATTGATCGAGCGGACTTCCAGTGCAATAAGGGATGTTAGACT GTCTAGTGAACCTGATCACAGACCAGGCTATGGTGCTGGAACCTCTGGTGTGGCACCTGATGCAGCTGAAATCCAGCTGAAGAGTCCAAATTGGCTTTTC GGCCAGAGGAAAGATGGAGCGAGTAATACTGATCCTAAAACAGCTGAGCAGGAAACCGAGAATGGTGGCTGGGAAGATGATGATGTTGGTGCTCTATGTG ATATAAATTGGCTCTCCTCATCAACTGATGCCTTTGAAGAAGATATATTCCAAAAATACCTGGCAATGACCTCTGTTGGTGAAGCCACAGGCTGGGACCT GCAAGGGAACTCTTTGAGCATGATCCGGAACTGGAGCAGCATTTTGCTGATGTCCTACATGAATGCAATTGAGGTCGTGGACAGTGCCTCGGTAGAAGCC GAGGTGGAAGCAACCCTGAAAAATTATGTAAGCAGGTCGCGGATGATCCCAGTTGGCTATCTAGGTTGA
AA sequence Show only first row Show all	>Lus10016941 pacid=23159628 polypeptide=Lus10016941 locus=Lus10016941.g ID=Lus10016941.BGIv1.0 annot-version=v1.0 MNLTYVPKVDPDSSIAAALMDMYQSMGDALAHQYGGSAAHTTVFTERQGKWKASTQSREFIKSIKRYYSNAYTDGEKQDAINLFLGYFRPQEGRLALWEL DTDYYLHVAAVGDDPADSGIETTNSRVGAGLNLAPIPACKEDFSKMKLTSFDKLIERTSSAIRDVRLSSEPDHRPGYGAGTSGVAPDAAEIQLKSPNWLF GQRKDGASNTDPKTAEQETENGGWEDDDVGALCDINWLSSSTDAFEEDIFQKYLAMTSVGEATGWDLQGNSLSMIRNWSSILLMSYMNAIEVVDSASVEA EVEATLKNYVSRSRMIPVGYLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10016941 [exp]	0	1
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10004841 [exp]	1.4	0.9449
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10010230 [exp]	2.4	0.9242
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Lus10035109 [exp]	2.8	0.9078
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10028942 [exp]	3.0	0.9146
AT1G68490			unknown protein		Lus10027557 [exp]	3.9	0.9022
					Lus10011631 [exp]	4.2	0.9019
AT2G38940		PHT1;4, ATPT2	ARABIDOPSIS THALIANA PHOSPHATE...		Lus10033866 [exp]	5.7	0.8916
AT1G22540			Major facilitator superfamily ...		Lus10001287 [exp]	5.8	0.8788
AT2G19130			S-locus lectin protein kinase ...		Lus10018537 [exp]	6.3	0.8420
					Lus10014031 [exp]	6.7	0.8821

Compare expression of checked genes

Lus10016941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.