Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08490 924 / 0 SLG1 SLOW GROWTH 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 414 / 8e-131 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G63370 411 / 4e-130 OTP86 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 396 / 2e-124 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22150 394 / 4e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18485 386 / 1e-119 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G16480 377 / 9e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G55740 373 / 4e-116 CRR21 chlororespiratory reduction 21, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 372 / 1e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53360 365 / 8e-114 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014828 [exp] 568 / 0 AT5G08490 339 / 2e-110 SLOW GROWTH 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 457 / 1e-146 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 451 / 2e-144 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 421 / 9e-134 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 420 / 2e-133 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010473 [exp] 407 / 9e-129 AT3G22150 1007 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 405 / 6e-127 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 402 / 6e-126 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003806 [exp] 400 / 1e-125 AT3G22150 997 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G134300 [exp] 1149 / 0 AT5G08490 977 / 0.0 SLOW GROWTH 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 443 / 2e-142 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 429 / 5e-136 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G007800 [exp] 425 / 7e-136 AT3G22150 1088 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 424 / 8e-134 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 415 / 1e-130 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075800 [exp] 410 / 1e-129 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G258500 [exp] 405 / 4e-128 AT2G40720 481 / 4e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G137900 [exp] 407 / 1e-127 AT3G09040 421 / 3e-131 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 404 / 6e-126 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10016943 pacid=23159603 polypeptide=Lus10016943 locus=Lus10016943.g ID=Lus10016943.BGIv1.0 annot-version=v1.0 ATGCTTGAGAGAGCTGATTCAAGAGCCAGGGTCTTAGTAGCTAATGTCAGCTCTTCCTGGTCCGGGACTGAACTCGATTACCAATGCCTCGCTTCAGTTC TCAAATCATGTACTGCTTTATCTGCCATCAAATTCGGCCGTGCCATCCACGGGCGTATTTGTAAACAAGGCCATCTCTCGTGCCAATACGTCTCGAAAGC TTTACTTAACCTCTATGCCAAGCGTGGTCCTCTCAGTGACTGCAATAAGTTGTTTGCAGAAGTGGGTGATTGTCAGCATGATCCAGTCTTTCGGAACATA CTTTTATCTGGGTTCGCTAGTACCAGAATGTATGAAACTGAAACGTTGCAGTTGTTTACTGAAATACATGCTGACAATGAACCAAAACCCACTTCAGTTA CTGTTGCTACTGTCCTTCCTGTATGTGCTCGTTTGGGAGATATATGTGCAGGTAGGAATGTGCATTGTTTTGCAATCAAATCTGGCTTGGGAAATCATAC ACTTGTAGGGAATGCTTTGATATCAATGTATGCCAAATTGGGATTGGTACGCAACGATGCATATTCTGCTTTTGAGAGCATAACTACCAAAGACGTTGTT TCCTGGAACGCAGTTATTGCTGGGTTTTCTGAGAATAAGTTGATGGTTGATGCATTCAGGTTGTTCAGGTTGATGCAGAAAGGTGAGACGAGACCAAATT ATGCTACCATCGCTAATGTTTTGCCTGTCTGTGCATCTCTAGATAAGGATGTCGCGTACTGCTTCGGTAAAGAGATTCATGGTTATGTGCTTCGTAACAA TGAGTATCTGCAGGATGTATCCATCTATAATGCTCTGGTGAGTTTCTACTTGAGGGTTGAACAGATAGAGTTAGCAGAATTACTGTTTCGAAGGATGGCA TTCAAAGATTTAGTTTCTTGGAATGCTATTATTGGCGGCTATGCATCGAATGGTAAATGGTTAAAAGCGTTGCAAGTGTTTGATGAATTGCTCACTATAG AAACGGTTGAGCCAGATACTGTCACATTTGTTAGCGTGCTTCCTGCATGTGCACAATTGAAGGACCTAAAACGTGGGAGAGAGACTCATGGATATGTTCT CCGAAATTGTGGTTTATACTTGGACACATCTGTTGCAAATGCATTGATCAACTTTTATGCAAAGTGTGATGATCTTAAATCGGCATATCATACATTTTGC ATGATAACTAAGAGAGACTTGATATCGTGGAACTCTATCCTTGATGCATTTGCAGGAAGGGGTGATAGACAATTTGCGTGTACATTAGATTTTATGTTTA GAGAAAGATTTATACCAGATTCTATTACCATTCTAAGCGTTATCCTGTATTGTGAGAACATGTTGAGGGAAGATAAGATAAAGGAGGTCCATAGTTATTC AATTAGGCATCATTTCTTGGAATCTGACGAGCAGCCTAAGGTTGGAAATGCACTACTTGCTGCATACGCTAAATGTGGCAATATAGAGTATGCCTTCAAG GTTTTTCAAAGTCTGTCAGAGAAGAGGAATTTGATTTCCTTCAATTCCATGATTTCTGGTTATGTGAATCATGGATTGCATGACGAGGCATATGCCATTT TCAGGAGCACGCCCAGCATGGATCTCACAACTTGGAATCTTATGGTGCGAGCATATGCCGAGAATGAGTGTCCAAGTCAAGCTGTCAGTCTGTTCCATGA CCTACTAGCTCAAGGGATGAAGCCAGATGAAGTTACTATTATGAGCCTCCTTCCAGTATGTACGCAATTTGCTTGTGGACACCTAATGAAAGAGTGTCAT GCATATGTGATTCGATCTTCTTTCGTTGATGCCCGATTGAAGGGTGCACTGTTAGATGTATATGCAAAGTGCGGTAGCGTAGGATACGCCCGGAAAATTT TCCAGTCAACCCTGCTTAAGGATATTGTCCTGTATACTTCCATGATTGGTGGATATGCAATGCATGGTATGGGGAAAGAGGCAGTCGGAACTTTCTCTCA TATGCTTGAATTGGGTGTAAAGCCAGATCATGTGATCATCACTGCGGTTTTATCTGCTTGTAGCCATTCTGGTCTTATGAATGAGGGGATGGAAATCTTC AAATCCATAGAGAAGGTATTCAAAATCAAACCAACAGTCGAACAGTACTGCTGTGTGGTTGATCTCCTTGCTCGAGGTGGCCGAATCAGAGATGCATATT CCTTGGTAACAGGAATGCCAAATGGTGGTGGGAATGCAAATGTTTGGGGAGCTTTGTTGGGTGCCTGTAAGACCCACCATGAAGTGGAACTAGGGAACAT AGTGGCTGATTCTCTGTTCAAAATGGAAGCAAACAACATTGGTAATTATGTTGTCCTTTCAAACATCTTTGCAGCTGATGAAAGATGGGACAAGGTGGTT GAGGTGAGGAAACTAATGAAGAGCAGAGATTTGAAAAAACCAGCAGGATGCAGTTGGATTGAAGTGGATAGGAAGGAGAGTGTTTTTGTGTCAGCAGATT CATCGCATCCTCAAAGAAACTGTATTTATGCGATGTTAAGCACTTTAGCTTTGCAAATCAAAGAGCCACGTCAAATGAATCAACAATTTTGGGAATAA
AA sequence Show only first row Show all	>Lus10016943 pacid=23159603 polypeptide=Lus10016943 locus=Lus10016943.g ID=Lus10016943.BGIv1.0 annot-version=v1.0 MLERADSRARVLVANVSSSWSGTELDYQCLASVLKSCTALSAIKFGRAIHGRICKQGHLSCQYVSKALLNLYAKRGPLSDCNKLFAEVGDCQHDPVFRNI LLSGFASTRMYETETLQLFTEIHADNEPKPTSVTVATVLPVCARLGDICAGRNVHCFAIKSGLGNHTLVGNALISMYAKLGLVRNDAYSAFESITTKDVV SWNAVIAGFSENKLMVDAFRLFRLMQKGETRPNYATIANVLPVCASLDKDVAYCFGKEIHGYVLRNNEYLQDVSIYNALVSFYLRVEQIELAELLFRRMA FKDLVSWNAIIGGYASNGKWLKALQVFDELLTIETVEPDTVTFVSVLPACAQLKDLKRGRETHGYVLRNCGLYLDTSVANALINFYAKCDDLKSAYHTFC MITKRDLISWNSILDAFAGRGDRQFACTLDFMFRERFIPDSITILSVILYCENMLREDKIKEVHSYSIRHHFLESDEQPKVGNALLAAYAKCGNIEYAFK VFQSLSEKRNLISFNSMISGYVNHGLHDEAYAIFRSTPSMDLTTWNLMVRAYAENECPSQAVSLFHDLLAQGMKPDEVTIMSLLPVCTQFACGHLMKECH AYVIRSSFVDARLKGALLDVYAKCGSVGYARKIFQSTLLKDIVLYTSMIGGYAMHGMGKEAVGTFSHMLELGVKPDHVIITAVLSACSHSGLMNEGMEIF KSIEKVFKIKPTVEQYCCVVDLLARGGRIRDAYSLVTGMPNGGGNANVWGALLGACKTHHEVELGNIVADSLFKMEANNIGNYVVLSNIFAADERWDKVV EVRKLMKSRDLKKPAGCSWIEVDRKESVFVSADSSHPQRNCIYAMLSTLALQIKEPRQMNQQFWE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Lus10016943 [exp]	0	1
AT1G62730			Terpenoid synthases superfamil...		Lus10024610 [exp]	1.0	0.9018
AT3G58610			ketol-acid reductoisomerase (....		Lus10011918 [exp]	3.9	0.8622
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10031661 [exp]	4.6	0.8398
AT4G23620			Ribosomal protein L25/Gln-tRNA...		Lus10011005 [exp]	5.7	0.8744
AT3G26618		ERF1-3	eukaryotic release factor 1-3 ...		Lus10032447 [exp]	6.0	0.8322
AT4G36680			Tetratricopeptide repeat (TPR)...		Lus10024025 [exp]	6.3	0.8459
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10023863 [exp]	6.5	0.8415
AT3G07770		Hsp89.1, AtHsp9...	HEAT SHOCK PROTEIN 90-6, HEAT ...		Lus10006374 [exp]	6.9	0.8609
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10000113 [exp]	10.5	0.8266
AT3G58610			ketol-acid reductoisomerase (....		Lus10022849 [exp]	11.0	0.8260

Compare expression of checked genes

Lus10016943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.