Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035524 [exp] 176 / 5e-56 ND / Lus10027774 [exp] 114 / 4e-32 ND / Lus10006539 [exp] 107 / 3e-29 ND / Lus10006537 [exp] 99 / 6e-26 ND / Lus10002859 [exp] 97 / 2e-25 ND / Lus10001546 [exp] 93 / 2e-23 ND / Lus10039441 [exp] 67 / 3e-13 ND / Lus10039442 [exp] 67 / 3e-13 ND / Lus10039474 [exp] 67 / 4e-13 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016944 pacid=23159600 polypeptide=Lus10016944 locus=Lus10016944.g ID=Lus10016944.BGIv1.0 annot-version=v1.0 ATGTCGACGTTTACCTTAACTTCCGAGAAACACTTCTTGAAGACCCACATAGGCGGCGACATCCAAGTCTACGAGTACATGGACGACCCAAATGTTTTCG ACATGATCCACGCCTCCGACAGCTCCCATTGGCATGACAAGGCCATCGTCGGCACTTCCCGCAAAGCGTCGTTTCAGGCACTGGAGTTGTTCGGGGTGAC GATCGATGGCAGCCAACTGAAGGAGCTTGTGAAAGATTTGACCATTACGGACGCAAGCGGTCAGACGTTTCATCTGGTAGTGAACCGTCAAGGTCTTTGT TTCATGGACGTGGGAAGTCCGCCGATCGTGCGGCTGAGAATGAACGATCATTTCGGCTGGTCAAAGTACGGGGTCAAGCCCCAGATCAGCACCATATGGA ACATATGGGACATGAACAACGGCGCCATTTTGCTCGCATCTCCTACGTCGTCGGATTATAAGAATAACATTAATGATGATGAGTCAGCCGGCGGATGGAA GAAGCTAGTTGAGGACAAGGACAAGCAACTAGCTTCCCTCAAGACTGCCTTGAAAAAGCTTTGTGACTGTGATGACAAACAAAGTGTTTGA
AA sequence Show only first row Show all	>Lus10016944 pacid=23159600 polypeptide=Lus10016944 locus=Lus10016944.g ID=Lus10016944.BGIv1.0 annot-version=v1.0 MSTFTLTSEKHFLKTHIGGDIQVYEYMDDPNVFDMIHASDSSHWHDKAIVGTSRKASFQALELFGVTIDGSQLKELVKDLTITDASGQTFHLVVNRQGLC FMDVGSPPIVRLRMNDHFGWSKYGVKPQISTIWNIWDMNNGAILLASPTSSDYKNNINDDESAGGWKKLVEDKDKQLASLKTALKKLCDCDDKQSV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10016944 [exp]	0	1
AT2G27140			HSP20-like chaperones superfam...		Lus10003356 [exp]	1.0	0.9748
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10020190 [exp]	1.7	0.9690
AT1G75260			oxidoreductases, acting on NAD...		Lus10010832 [exp]	2.0	0.9723
AT1G75260			oxidoreductases, acting on NAD...		Lus10001963 [exp]	4.6	0.9596
AT1G75260			oxidoreductases, acting on NAD...		Lus10033210 [exp]	5.5	0.9608
AT5G36930			Disease resistance protein (TI...		Lus10004726 [exp]	5.7	0.9644
					Lus10033890 [exp]	6.0	0.9425
AT3G19910			RING/U-box superfamily protein...		Lus10029693 [exp]	6.6	0.9518
AT5G14500			aldose 1-epimerase family prot...		Lus10014621 [exp]	7.1	0.9147
AT1G54400			HSP20-like chaperones superfam...		Lus10032902 [exp]	7.7	0.9597

Compare expression of checked genes

Lus10016944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.