Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29690 869 / 0 ATHANSYNAB, ASA2 anthranilate synthase 2 (.1) AT5G05730 842 / 0 JDL1, WEI2, TRP5, AMT1, ASA1 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) AT3G55870 719 / 0 ADC synthase superfamily protein (.1) AT2G28880 196 / 1e-53 ADCS, EMB1997 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) AT1G18870 61 / 2e-09 ATICS2, ICS2 ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, isochorismate synthase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014830 [exp] 1137 / 0 AT2G29690 875 / 0.0 anthranilate synthase 2 (.1) Lus10014842 [exp] 852 / 0 AT5G05730 864 / 0.0 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) Lus10009888 [exp] 743 / 0 AT5G05730 755 / 0.0 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) Lus10036525 [exp] 170 / 2e-44 AT2G28880 1026 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Lus10041403 [exp] 168 / 7e-44 AT2G28880 1078 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Lus10023622 [exp] 66 / 7e-11 AT1G74710 623 / 0.0 SALICYLIC ACID INDUCTION DEFICIENT 2, ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16, ARABIDOPSIS ISOCHORISMATE SYNTHASE 1, ADC synthase superfamily protein (.1.2) Lus10024255 [exp] 49 / 1e-05 AT1G18870 459 / 2e-158 ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, isochorismate synthase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G044300 [exp] 934 / 0 AT2G29690 808 / 0.0 anthranilate synthase 2 (.1) Potri.010G190600 [exp] 880 / 0 AT5G05730 835 / 0.0 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) Potri.008G066600 [exp] 213 / 5e-67 AT3G55870 213 / 3e-68 ADC synthase superfamily protein (.1) Potri.001G250300 [exp] 207 / 2e-63 AT2G29690 187 / 2e-56 anthranilate synthase 2 (.1) Potri.010G221500 [exp] 177 / 3e-47 AT2G28880 1016 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Potri.012G070000 [exp] 56 / 7e-08 AT1G18870 628 / 0.0 ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, isochorismate synthase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00425 [flax] [poplar] Chorismate_bind chorismate binding enzyme PF04715 [flax] [poplar] Anth_synt_I_N Anthranilate synthase component I, N terminal region
Representative CDS sequence Show only first row Show all	>Lus10016945 pacid=23159608 polypeptide=Lus10016945 locus=Lus10016945.g ID=Lus10016945.BGIv1.0 annot-version=v1.0 ATGGACAAAGCCCTTGCCTTCGTTCTTCCTCACCCGCCGTCTGCTTTCCGTATGCATTCTGTCAGCGTCAGTGGACGACTCGCCAGCTCAAGCTCCTCAA CGCGTTTTGCTCCCCTCAAATGTGCTGCCTCGACTTCTGAATCAATTGTTGATCAATCAGGAAAATTTCATGAAGCTGCGAAGAAAGGGAATCTGATTCC TCTACACCAATGCATTTTATGTGATCACCTCACACCAGTGCTTGCTTACCGATGTCTTGTAAAGGAAGATGATAGAGATGCACCAAGCTTTCTGTTTGAG TCTGTTGAACCTGGTTTGAATGCTTCGACCATTGGAAGGTATAGCATCATTGGAGCTCAACCGACCATCGAGATTGTGGCAAAAGAGAACATGGTTACTA CCATGTACCATCATGAAAACCGAAGGGAGGAGCAGATAGTAGATGACCCAATGGATGTTCCTCGAAGAATAATGCAAGGCTGGACACCCCAACTTGTTGA TGAGCTTCCTGAATGTTTTTGTGGTGGATGGGTTGGTTTTTTTTCATATGACACCGTGAGGTTTGTTGAGAAGAAAAAGATGCCTTTTTCTGCTGCCCCT CCTGATGACAGAAACCTGCCTGATATCCATCTCGGGCTTTATGATGATATTATCATCTTTGATCATTTACAAAAGAAAGCACATGTGATTCACTGGGTTC AGCTAGATCAGTATTCTTCCGTCAAAGAGGCCTATAGTGATGGAGTTGATCGGTTGATGAACTTAATTTCTAGAGTTCATGATATAACACCCCCAAGGCT ATCTGCAGGTTCAATCAAGCTATTCACTGATCTTTTTGGCCCTAAATTGGAGGTATCAAGCATGACGAATGAACAATATAAGGAGGCAGTATTGACAGCT AAAGAGCATATTCTAGCTGGTGACATATTCCAAATTGTATTAAGTCAGCGCTTTGAACGAAGAACATTTGCAGATCCATTTGAGGTGTACAGAGCTCTGA GGATTGTCAATCCAAGTCCGTATATGACATACTTACAAGCTAGAGGGTGTATACTAGTTGCTTCCAGCCCAGAAATTCTAACTCGAGTTAAGAAAAATAC AATCACAAATCGACCTCTTGCTGGGACAGTTAGAAGGGGAAAGACACCAAAGGAAGATGTAATGTTGGAAAGTGAGCTCTTGAAAGATGAAAAGCAATGC GCAGAACACATTATGCTTGTTGACTTGGGAAGGAATGATGTTGGAAAGGTATCCAAGCCTGGATCTGTGGAAGTTGAAAAGCTCATGAATATTGAGCGCT ACTCCCACGTTATGCATATCAGCTCAACGGTCACTGGTGAATTACTAGATGATCTAATCAGCTGGGATGCCTTACGTGCCGCACTTCCAGTTGGCACCGT CAGCGGAGCACCAAAGGTGAAAGCAATGGAGTTGATCGATGAGCTGGAAGTGACTCGGCGAGGGCCATACAGTGGTGGATTTGGTGGGATATCGTTCAAC GGGGATATGGACATTGCACTTGCTTTAAGAACTATCGTATTCCCGACAAGCACCCGTTACGACACAATGTACTCATATGCTGATGCGAACAAACGCAGAG AGTGGGTTGCTCACATCCAGGCTGGAGCAGGGATAGTCGCTGATAGTGTTCCTGAGGATGAGCAAAGAGAGTGCGAGAATAAAGCTGCTGGCCTCGCTCG TGCCATTGATCTTGCTGAATCATCTTTTGTTAACAAATAA
AA sequence Show only first row Show all	>Lus10016945 pacid=23159608 polypeptide=Lus10016945 locus=Lus10016945.g ID=Lus10016945.BGIv1.0 annot-version=v1.0 MDKALAFVLPHPPSAFRMHSVSVSGRLASSSSSTRFAPLKCAASTSESIVDQSGKFHEAAKKGNLIPLHQCILCDHLTPVLAYRCLVKEDDRDAPSFLFE SVEPGLNASTIGRYSIIGAQPTIEIVAKENMVTTMYHHENRREEQIVDDPMDVPRRIMQGWTPQLVDELPECFCGGWVGFFSYDTVRFVEKKKMPFSAAP PDDRNLPDIHLGLYDDIIIFDHLQKKAHVIHWVQLDQYSSVKEAYSDGVDRLMNLISRVHDITPPRLSAGSIKLFTDLFGPKLEVSSMTNEQYKEAVLTA KEHILAGDIFQIVLSQRFERRTFADPFEVYRALRIVNPSPYMTYLQARGCILVASSPEILTRVKKNTITNRPLAGTVRRGKTPKEDVMLESELLKDEKQC AEHIMLVDLGRNDVGKVSKPGSVEVEKLMNIERYSHVMHISSTVTGELLDDLISWDALRAALPVGTVSGAPKVKAMELIDELEVTRRGPYSGGFGGISFN GDMDIALALRTIVFPTSTRYDTMYSYADANKRREWVAHIQAGAGIVADSVPEDEQRECENKAAGLARAIDLAESSFVNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29690		ATHANSYNAB, ASA...	anthranilate synthase 2 (.1)		Lus10016945 [exp]	0	1
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10043053 [exp]	5.7	0.8162
AT5G56280		CSN6A	COP9 signalosome subunit 6A (....		Lus10027082 [exp]	6.3	0.8196
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Lus10033860 [exp]	7.2	0.8238
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Lus10000701 [exp]	13.1	0.8129
AT1G04910			O-fucosyltransferase family pr...		Lus10032603 [exp]	15.3	0.8006
AT3G07210			unknown protein		Lus10038194 [exp]	22.8	0.7838
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10036747 [exp]	23.0	0.7901
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10031409 [exp]	24.3	0.7741
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10003873 [exp]	25.6	0.7971
AT5G43960			Nuclear transport factor 2 (NT...		Lus10022873 [exp]	26.5	0.7875

Compare expression of checked genes

Lus10016945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.