Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034056 [exp] 254 / 5e-79 AT4G19130 47 / 4e-05 Replication factor-A protein 1-related (.1) Lus10006887 [exp] 182 / 3e-50 AT4G19130 63 / 7e-10 Replication factor-A protein 1-related (.1) Lus10003025 [exp] 163 / 6e-45 AT5G61000 57 / 2e-08 Replication factor-A protein 1-related (.1) Lus10017803 [exp] 155 / 1e-42 ND / Lus10036312 [exp] 135 / 5e-34 AT5G08020 67 / 3e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10000293 [exp] 115 / 1e-27 ND 48 / 2e-05 Lus10025008 [exp] 113 / 5e-27 AT5G08020 64 / 9e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10027612 [exp] 114 / 6e-27 AT1G52950 49 / 1e-05 Nucleic acid-binding, OB-fold-like protein (.1) Lus10010883 [exp] 108 / 3e-26 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016946 pacid=23159623 polypeptide=Lus10016946 locus=Lus10016946.g ID=Lus10016946.BGIv1.0 annot-version=v1.0 ATGACAAATCCAGTTGTTGCATTTACTGGCTTCCGCATCGATATTCATTTTGGTGTGCTTTACTATGCGTTATTTCTTTCCTCCTTTGTTCCCTTTTGCT TTCCTGTCTCATACGAATGCCCTGTTTGGTCTCCTCTCGTGGCTTCACTTTTTTTCCAGAAAGGACAGCAGCCTCCAGTGGGCTTGCCAGCCGCATCTGC TTGGAACCATTTGATGAAACTGCAACCCAACTCCGAGACCATTTCTATTGCGTGGTCTTTGCTTACAAGTCCTGCTCGTGTGTTCTACTTATCCGGCTTT ACCACATACCCTCGGCCTATCACGTTTGTTCCGCCTAAATTTTCAACCCCAGAAAAGACAAGGCAACATGTTGAGGCCTCCTTTAGGAACATTCATGAAC TGCTAGCTATGTATGCTGTCGGGGGGATCTGGCGATGTGGCTTACAGGTACTCAGCATAACCTTAACCCTATTTGTCGTTATACCTCCCCCAAAAGTGTT CAGAATCCATCTCATATACACACCTTATCCTTCTATGTACCGCCTGAAACTACTGGTGTCCGATCCAACCACTCAGGCTACGTTCGTTCTTCTTGGAATG ACCGCTGATAAGATTATGCCTATCTCTGCTGCTGAACTTCCCATGGCATATCCTAACGAATACAGTGAGCTGCCACCGCCGTTCCGCCTGCTGCTCAATC AAAAAGTCACATTCGAGGTCCATCTCCCCCGTCACTTGCGTGTCAACAGCTTTCCCGATATCAACATTTTCAAAATATGGGGCTTGGTCATACCGCGGGC TCAGCTTGCTGCTACTCTCCCCCCTCCACTGCCGCCCCGCCCACCAAGCCCACCTGCACGCCATGACACACCTATCCCTCCCGATCCCAACTATGTATAC CCCATCCCTACTTACAACCCACAAGCTGGATCGTCTCAAACTGCCGCTGGTCGGCTAGATCCTACCACTCCTTTTCAGCTCCAACCCACTCCACGGGGCT CGACTCCGTCTGTCACTGTTGTCGATCATGCTGCCCCTCGAACGCCTGAAACATATACGATAGATGATATTCCTCTTACGCTCCTGGTCCGCCAGAATCC AGCAGCTCAGCGATCATCTGCTATAACTTTTGTCCCTACTTCCTCTCAATTTACACCGGCCCAACTTACTTCAGCTGCTCTGGCTACATCTCCGTTGTCT GTTGTTAAACAAGAGCAGCTAGCAAAGAATGCTGCTACAAGTCCTGTTGGTCCATCCATTTGGAACAACCCTGGTCTGCCCTTGCGACCCACCTTGCCTG CAAAAACCACCGTTAGTGCTCGTAGACAGTTGTTCTCACCTTAA
AA sequence Show only first row Show all	>Lus10016946 pacid=23159623 polypeptide=Lus10016946 locus=Lus10016946.g ID=Lus10016946.BGIv1.0 annot-version=v1.0 MTNPVVAFTGFRIDIHFGVLYYALFLSSFVPFCFPVSYECPVWSPLVASLFFQKGQQPPVGLPAASAWNHLMKLQPNSETISIAWSLLTSPARVFYLSGF TTYPRPITFVPPKFSTPEKTRQHVEASFRNIHELLAMYAVGGIWRCGLQVLSITLTLFVVIPPPKVFRIHLIYTPYPSMYRLKLLVSDPTTQATFVLLGM TADKIMPISAAELPMAYPNEYSELPPPFRLLLNQKVTFEVHLPRHLRVNSFPDINIFKIWGLVIPRAQLAATLPPPLPPRPPSPPARHDTPIPPDPNYVY PIPTYNPQAGSSQTAAGRLDPTTPFQLQPTPRGSTPSVTVVDHAAPRTPETYTIDDIPLTLLVRQNPAAQRSSAITFVPTSSQFTPAQLTSAALATSPLS VVKQEQLAKNAATSPVGPSIWNNPGLPLRPTLPAKTTVSARRQLFSP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10016946 [exp]	0	1
AT3G47340		AT-ASN1, DIN6, ...	DARK INDUCIBLE 6, ARABIDOPSIS ...		Lus10026376 [exp]	1.4	0.8669
					Lus10011947 [exp]	11.4	0.7847
					Lus10004769 [exp]	15.5	0.7527
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Lus10007410 [exp]	32.0	0.7124
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Lus10026372 [exp]	46.8	0.6860
AT3G22490			Seed maturation protein (.1)		Lus10006121 [exp]	53.3	0.7418
					Lus10000456 [exp]	57.5	0.7177
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10026807 [exp]	66.1	0.6755
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10040260 [exp]	67.5	0.7455
					Lus10040545 [exp]	69.5	0.6842

Compare expression of checked genes

Lus10016946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.