Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72040 598 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008257 [exp] 963 / 0 AT1G72040 605 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G081600 [exp] 733 / 0 AT1G72040 630 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.013G109400 [exp] 716 / 0 AT1G72040 639 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01712 [flax] [poplar] dNK Deoxynucleoside kinase
Representative CDS sequence Show only first row Show all	>Lus10016950 pacid=23159606 polypeptide=Lus10016950 locus=Lus10016950.g ID=Lus10016950.BGIv1.0 annot-version=v1.0 ATGCCCTCCCACGCCGCCGCTTTATCCTCTGCTGCCTCCTCCCCCGCCGCCGCCTCTTTCGCTCGCAATCCCTCCTCTCCCAAATCCGCCGCTATGTCTC GCTCCTATTACACCCCCTGCCGCACCGCAATTGACGGCGGGAGAACCGCAGCCGGGACCCCTCTCCGCGCCTGGCAGGTGGGCCGCTCTGTCTTCCACCG TACGCTCTCAGCGGCCGAGCCCTTGGGGTCTTCTTCTTCATCTTCCTCCGTCACGGCCGAGGATGTATTTAAGGCGGAAGAGAAGCCGACGAAGATAGGG CGACGACAGAAGGCTTCAAGCGACGTGGAAGGTAACGAAGATTTGCTGACAATCCCTGGTGTTGGTCCTAAGAACTTGAGGAAACTGGTGGAGAAAGGGT TACGAGGTATGGCTGAGCTCAAACAGCTGTATAAGAACAAGTTTCTAGGGAAAGAAAATGAGACAATGGTGGAGTATCTAAAGAGTTCAGTAGGAATTAT CCACCGGACCCATGCCGAGAGCATCACTAGCTACGTTAAAGAAAGTGTGGATGAGGAGTTGAAAGATGTGAACTCTGATGATGTCAACAATATGATTCCG AAGAAACAACGGATTACCTTTTGCGTTGAAGGAAACATAAGTGTTGGAAAGACTACTTTCCTTCAGAGAATAGTTAGTGATACCATTGAGCTTAGGGACT TAGTAGAGGTGGTGCCTGAACCCATTGATAAGTGGCAGGATATTGGACCTGACCACTTCAACATACTGGATGCTTTCTATGCTCAACCCGACAGGTATGC CTATACCTTCCAGAACTATGTTTTCGTCACCAGGGTTATGCAAGAGCGAGAGTCCTCTGTTGGCCTAAAGCCGCTTAGGCTCATGGAACGAAGCGTTTTC AGTGACAGAATGGTGTTTGTTCGAGCTGTGCATGAAGCAAAGTGGATGAATGAGATGGAGATCAGCATCTATGACTCGTGGTTTGATCCAGTTGTATCTG TTCTTCCTGGTCTTGTTCCAGATGGGTTCATCTATCTGAGGGCAACCCCTGATACTTGCCACAAGAGAATGAAGCATCGTCAGAGGGCAGAAGAGGGTGG AGTCTCCCTAGATTATCTTCGTGGTTTGCATGAAAAGCACGAGAGCTGGCTTTTTCCCATGGAAACTGGTAATCATGGGGTTTTCTCAGTCGGTAGGCCT CCTTTGCAACTGGATAGCTCTATTCATCCTGATATTAGGGATCAAGTGTTTTTCCTGGAAGGTGATCACATGCATTCCAGCATTCAGAAGGTTCCTGCGC TGGTTCTTGATTGTGAAGCCAACATAGATCTTAACAAAGATACTGAAGCAAAAGAGCACTATGCGCGCCAGGTTTCTGCATTCTTCAAGTACGTGAAGCA AATGAAAGAAGTTCAGCCGACGCCTGGTGCTGGCGCCCCGAACACCAAACCACGACAAATCGTACTGCCTCGTGAAGGTGGATTGCTACTACCGAATGGG AAGCACTTTGATGAATCTGCTCTCAAGTCTCTGGATTTTCGACGCGCAATATCCCTCATGTCTAGCAAATGA
AA sequence Show only first row Show all	>Lus10016950 pacid=23159606 polypeptide=Lus10016950 locus=Lus10016950.g ID=Lus10016950.BGIv1.0 annot-version=v1.0 MPSHAAALSSAASSPAAASFARNPSSPKSAAMSRSYYTPCRTAIDGGRTAAGTPLRAWQVGRSVFHRTLSAAEPLGSSSSSSSVTAEDVFKAEEKPTKIG RRQKASSDVEGNEDLLTIPGVGPKNLRKLVEKGLRGMAELKQLYKNKFLGKENETMVEYLKSSVGIIHRTHAESITSYVKESVDEELKDVNSDDVNNMIP KKQRITFCVEGNISVGKTTFLQRIVSDTIELRDLVEVVPEPIDKWQDIGPDHFNILDAFYAQPDRYAYTFQNYVFVTRVMQERESSVGLKPLRLMERSVF SDRMVFVRAVHEAKWMNEMEISIYDSWFDPVVSVLPGLVPDGFIYLRATPDTCHKRMKHRQRAEEGGVSLDYLRGLHEKHESWLFPMETGNHGVFSVGRP PLQLDSSIHPDIRDQVFFLEGDHMHSSIQKVPALVLDCEANIDLNKDTEAKEHYARQVSAFFKYVKQMKEVQPTPGAGAPNTKPRQIVLPREGGLLLPNG KHFDESALKSLDFRRAISLMSSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72040			P-loop containing nucleoside t...		Lus10016950 [exp]	0	1
AT4G12060			Double Clp-N motif protein (.1...		Lus10031694 [exp]	1.0	0.9208
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10002599 [exp]	3.2	0.8917
AT1G48570			zinc finger (Ran-binding) fami...		Lus10009049 [exp]	6.0	0.8800
AT3G06950			Pseudouridine synthase family ...		Lus10039480 [exp]	6.9	0.8160
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10027552 [exp]	7.3	0.8666
AT4G17040		HON5, CLPR4	happy on norflurazon 5, CLP pr...		Lus10011014 [exp]	8.0	0.8873
AT1G14410		WHY1, ATWHY1, P...	A. THALIANA WHIRLY 1, ssDNA-bi...		Lus10037206 [exp]	8.4	0.8872
AT3G49240		EMB1796	embryo defective 1796, Pentatr...		Lus10022406 [exp]	8.5	0.8481
AT5G16620		PDE120, TIC40, ...	pigment defective embryo 120, ...		Lus10002287 [exp]	9.2	0.8449
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10037428 [exp]	14.2	0.8291

Compare expression of checked genes

Lus10016950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.